UFO11134.5prime Sequence
1141 bp (1031 high quality bases) assembled on 2012-03-05
> UFO11134.5prime
CAGTCGACATGCTAATGAACATCCATCAACCAACTATTGATCAGCAAACA
ATTCAACACTATCAGCAGCAATTGGCTGCTCAGCAACAACAACAAGTACA
ACAGCAACAGTTGCAACAACACCAGGTGGTCGTCCAGCAGAATCAGCAGC
AGGCGCACCAGAACAGCTCCAATACCACAGCCGGCGTGGGCACCCAACAG
CTGTTCACATACAAAATGGCCAGCAGTTTTCCGAATCCGGCCACGACGAT
GGCCCAAGTGGTGGCCACATCGAACGCAGCCGGCACCACGGGCTATGATT
ATCGTCTAAATATGGCACAGGCAGCCGCAGCAGCAGCCGTACCCGGCTCC
CAGTGGTGGTATTCGGCCGCCAATCAGGGACAGGTCGATGCCAATACAGC
GGCGCAACTGCAGCACCAGCAGCAGCAACAGCAACAGCAACAACAGCAGC
AGCAGCAACAGCACCAGCAGCAACAACAGATGCAACAGCAGCAGCAGCAA
CAGAATGTCATCAATTCGGCGAGCCCCATGAGCAGAGTCAAGGCCGATGC
CAAGCCCAGAGGCCGAATGACCGCCTACGCATACTTTGTACAAACTTGCA
GAGAGGAGCACAAAAAGAAACATCCCGATGAGACGGTGATATTCGCCGAA
TTCTCGCGGAAGTGCGCCGAACGGTGGAAGACAATGGTGGACAAGGAGAA
GAAGCGCTTCCACGAAATGGCCGAGAAGGACAAGCAGCGATATGAGGCGG
AAATGCAGAACTATGTGCCGCCCAAGGGAGCGGTTGTGGGACGCGGCAAG
AAGAGGAAACAGATCAAGGACCCCAATGCTCCAAAACGTTCATTGTCTGC
GTTCTTCTGGTTCTGCAATGACGAGAGAAATAAGTGAAGGCACTTAATCC
CGAGTTCGGGAGTGGGCGACATCGCCAAGAGCTGGGACGAAAGTGGTCCG
ATGTGATCCCGAGTCAGCAGAGTACGAGTCGATGGCCGAGCGGACAGCTC
GAATATGACGCGGGATGACCGAGTACAGACGAGCGGGAAAAAAGCATGTT
CCGCACCGGTCGATGCAGGCGTCGATGCAAGCGCAGGCAAGAAAGCTGCG
TACTGCCGCCGCTGCCAGAACAGCCAGCGCTGAAAGACGAC
UFO11134.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsp1-RF | 2205 | CG12223-RF | 48..1166 | 9..1116 | 5090 | 98 | Plus |
| Dsp1-RE | 4240 | CG12223-RE | 263..1348 | 42..1116 | 4925 | 97.9 | Plus |
| Dsp1-RG | 2359 | CG12223-RG | 143..1207 | 63..1116 | 4820 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16336231..16336743 | 9..521 | 2565 | 100 | Plus |
| X | 23542271 | X | 16337084..16337251 | 679..846 | 840 | 100 | Plus |
| X | 23542271 | X | 16336850..16337009 | 521..680 | 800 | 100 | Plus |
| X | 23542271 | X | 16337381..16337534 | 845..993 | 430 | 94.2 | Plus |
| X | 23542271 | X | 16337627..16337702 | 1014..1089 | 195 | 89.6 | Plus |
Blast to na_te.dros performed 2014-11-27 21:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2398..2854 | 40..505 | 344 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2837 | 24..503 | 297 | 58.7 | Plus |
UFO11134.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:47 Download gff for
UFO11134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RF | 44..1172 | 9..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:18 Download gff for
UFO11134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RF | 48..1176 | 9..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:54 Download gff for
UFO11134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RF | 48..1176 | 9..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:54 Download gff for
UFO11134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16336231..16336743 | 9..521 | 100 | -> | Plus |
| X | 16336851..16337009 | 522..680 | 100 | -> | Plus |
| X | 16337086..16337249 | 681..844 | 100 | -> | Plus |
| X | 16337381..16337555 | 845..1011 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:18 Download gff for
UFO11134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16230264..16230776 | 9..521 | 100 | -> | Plus |
| arm_X | 16230884..16231042 | 522..680 | 100 | -> | Plus |
| arm_X | 16231119..16231282 | 681..844 | 100 | -> | Plus |
| arm_X | 16231414..16231588 | 845..1011 | 93 | -> | Plus |
