UFO11138.5prime Sequence
1104 bp (1000 high quality bases) assembled on 2012-03-05
> UFO11138.5prime
CAGTCGACATGTGCGCGAAATTCGTATGTGTAGTGCTGCTGGCCAGCCTT
GTGTGCGGTTCCATGGCCCTTCCCTCCCAGGACAACACCGAGCGGGACCT
GGTCAACATGCTGAACCGCTTAGACAGCGAGGAGTCCGTCGCGCTGTTCG
GCGGTCTGAGGATCGACCGGTCGGAGTCGGGCCGTAGCTTCGGTGCATCC
AAGGCCGTCGAGTCCTTCGAGGACCGCGCCGAGCGCTACCTGGAGACCCA
CGAGCTAAACCTCTCCTTCTCCGGCGATGAGCAGGACGAGAACTCCGAGA
ACGAGTACACCGGACGCGCCATGGATGAGTCCCGCAGCAAGCGCATGAAG
AAGATGCTGCTGCCCCTTCTTTTGGCCCTGAAGCTGAAGAAGGCCGTCGT
TGTCAAGATTATGTTCACCATCATCAAGTTCATCTCGCTGAAGGCTCTGG
CCATCTCCTTCCTGGCCCTCATCCTGGCTGGTGCCACCTTCTTCAAGGAT
CTGTTGGCCAAGAAGAAGGAACACATCACCACTGCCTACATCACCGGCAG
CCCGCTGAACGCCGACATCGTGCACTCCGACTGGAGCCGCAATGGTCAGG
CAGGTGCCGCCGATCTGGCCTACAACCACTATGGTCTGGCCCAGCCCTTC
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTGTATTCATTAAGCATTCTGCGACATGCAGCAT
CACAACGGCATGATGACTGATCGCAGCGCATCAGCACCTTGTCGCTGCGT
ATATTTTGCCATGTGACGGGGCGAGAGTTGCTTGGCCCGGTATCACTTGT
GAATACAGATGCTGACGAACATTCATACTAGAATGCAGTACGTACGCCAC
TGCA
UFO11138.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi15-RA | 1232 | CG1157-RA | 110..751 | 9..650 | 3210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6301913..6302231 | 9..327 | 1595 | 100 | Plus |
| 3R | 32079331 | 3R | 6303002..6303172 | 480..650 | 855 | 100 | Plus |
| 3R | 32079331 | 3R | 6302791..6302947 | 327..483 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:10:58 has no hits.
UFO11138.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:56 Download gff for
UFO11138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi15-RA | 108..754 | 9..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:37 Download gff for
UFO11138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi15-RA | 110..756 | 9..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:14 Download gff for
UFO11138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi15-RA | 110..756 | 9..656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:14 Download gff for
UFO11138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6301913..6302231 | 9..327 | 100 | -> | Plus |
| 3R | 6302792..6302944 | 328..480 | 100 | -> | Plus |
| 3R | 6303003..6303177 | 481..656 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:37 Download gff for
UFO11138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2127635..2127953 | 9..327 | 100 | -> | Plus |
| arm_3R | 2128514..2128666 | 328..480 | 100 | -> | Plus |
| arm_3R | 2128725..2128899 | 481..656 | 98 | | Plus |
