UFO11140.5prime Sequence
1134 bp (1029 high quality bases) assembled on 2012-03-05
> UFO11140.5prime
CAGTCGACATGGGCATGATGGACAACAATGGCGTCGGCAAGCTGACACAA
GAATCTCTAAAACGCAAGGAGCGTCTGCAAAAACTCCGGGAACAAGTGCA
AAACAAAGGAGGAGACGCTGCCGAGTCCATTGAAAAGTTACCCAAACCAG
TTTTCCGCAGCTACAAGCCCCAGAATGAGACCACCGATGGCGAGATTCTA
GCACAGGAACCCACGGGCAACATAGAATCAGCTGTGGAGGATCAATTGAG
TCTGCTCCAGCAGCCCATGGTGATAGATGAGATTGACATAACCAACCTGG
CTCCCCGAAAACCCGACTGGGATCTGAAGCGGGATGCCAGCAAAAAGTTG
GAGCGACTGGAACGACGTACCCAGAAAGCTATTGCTGAACTCATCCGTGA
GCGACTGAAACTGAACCAAATGGAGGATATCAGCCAAGCGGTGAATGTGG
CCACGGCTCATGCAGGTGAAAGTGTTCAGGAGGATTATGACGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAGTTGTCCATAT
TGGCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGGATTGGCTGAGA
CGAAAACATATCTCAATAAACCCTTTAGGGAAATAGGCAGTTTTCACGTA
CACGCACATCTGCGAATATATGGTGTAGAACTGCGAAATCGTCTGGTATT
CACTCCAGAGCGATGAACGTTTCAGTTGCTCATGGAACGGGTACAAGGGT
GAACCCTATCCAATACCAGGTCACGGCTCATGGC
UFO11140.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15525-RA | 654 | CG15525-RA | 101..585 | 7..491 | 2425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29997030..29997375 | 491..146 | 1730 | 100 | Minus |
| 3R | 32079331 | 3R | 29997438..29997576 | 145..7 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:11:01 has no hits.
UFO11140.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:56 Download gff for
UFO11140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15525-RA | 98..593 | 1..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:39 Download gff for
UFO11140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15525-RA | 97..592 | 1..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:16 Download gff for
UFO11140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15525-RA | 97..592 | 1..498 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:16 Download gff for
UFO11140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29997030..29997375 | 146..491 | 100 | <- | Minus |
| 3R | 29997438..29997580 | 1..145 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:39 Download gff for
UFO11140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25822752..25823097 | 146..491 | 100 | <- | Minus |
| arm_3R | 25823160..25823302 | 1..145 | 97 | | Minus |
