UFO11142.5prime Sequence
1144 bp (1037 high quality bases) assembled on 2012-03-05
> UFO11142.5prime
CAGTCGACATGCCCACGTCAAGTAGCATCCTGCAGAAGTTCCTCAGCAAC
GGTTTGGCCTTCGGCAAGTCCACCAAACTGGCGCTGGTGGTCCGAACCGA
CCTAAAGATGTCCAAGGGAAAGACAGCGGCCCAGTGCGCCCATGCGGCGG
TCATGTGCTACCAGAGCTCTGTGCAGGGAACCAAGCTGCAGAACGCCATT
CTGCAGCGTTGGTGTCGCCTGGGACAGCCGAAGATAGTGCTGCGCGTGGA
CAACTTCGAGCAGCTAAACTCCCTGGAGCGACAGGCCCAAGAGTCGAACG
TGGTGGCCGCCTTGGTGAGGGATGCCGGGCGCACTCAGCTGGAATCTGGG
ACAGCAACGGTCCTCGGACTGGGTCCAGCCCCTGCCGAAGATCTAGACAA
ATTGGTGGCGCATTTGAAGCTTTTGGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTC
ATAACCCTTTAGGAAATAGGCAGGTTTTCACCGTACACGCACATCTGCGA
TATATGTGTAGAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATG
AACGTTTCAGTTTGCTCATGAAACGTGTACAGGGTGAACACTATCCCATA
TTCACAGCTCACGTCTTTCATGCAACGATCGATAACATCATCAGGCCGGA
CAGATGATAGCGATAACTGGCTTATTTCTTACGCCTTAAAAGGG
UFO11142.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44194-RB | 851 | CG44194-RB | 386..802 | 9..425 | 2085 | 100 | Plus |
| CG44194-RA | 707 | CG44194-RA | 242..658 | 9..425 | 2085 | 100 | Plus |
| CG17327-RC | 851 | CG17327-RC | 386..802 | 9..425 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12996925..12997341 | 425..9 | 2085 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:11:05 has no hits.
UFO11142.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:57 Download gff for
UFO11142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17327-RA | 335..769 | 1..438 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:41 Download gff for
UFO11142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17327-RA | 235..669 | 1..438 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:17 Download gff for
UFO11142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17327-RC | 379..813 | 1..438 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:17 Download gff for
UFO11142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12996925..12997348 | 1..425 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:41 Download gff for
UFO11142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8822647..8823070 | 1..425 | 99 | | Minus |
