UFO11144.5prime Sequence
1134 bp (1050 high quality bases) assembled on 2012-03-05
> UFO11144.5prime
CAGTCGACATGCGTCTTCTGCTCATCCTCTCAGTTGTCCTGGCCGTGATC
CTCGGCTGCCACGCCTACAGCGCCACCTGGGGGCGCAGGGTCAACAACGA
TTTCCTCCTCTCACGCACCAGGGAAGTTCGCAATCCGATCAAGAACAACT
ACTGGAACGTGAACGTGAACTACCCCAATGGATTCTACAACATCTCCGCC
GTGATCGTGTACGACAACTTCAAGAACAACTCTGGAGCATCTCCTAGCCT
CTATTCCGGCGGTCCGGGCTACCGCTTTGCCACCGTGAATCTTCGTGGTC
AGGTGAACCGCGGAATCGACTCCACCGTCGAGATCTGGGGTCGTGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCA
TCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATC
ACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGC
CTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCC
ATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGC
TGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGT
TTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGG
AAATCGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCA
TGGAAAACGGTGTAACAGGTGAACACTATCCCATATCACAGCTCACGTCT
TTCATGCCATACGAAATTCCGATGAGCATCATCAGGCGGCAAGAATGTGA
ATAAAGCCGATAAACTGTGCTTATTTTTCTTTACGTCTTTAAATGCGTAT
ATCCAGCTGACGATCTGCTTAAGTACTGACACTG
UFO11144.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13324-RA | 511 | CG13324-RA | 37..374 | 7..344 | 1690 | 100 | Plus |
| CG13323-RB | 2562 | CG13323-RB | 39..376 | 7..344 | 1300 | 92.3 | Plus |
| CG13323-RA | 521 | CG13323-RA | 39..376 | 7..344 | 1300 | 92.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13049283..13049620 | 344..7 | 1690 | 100 | Minus |
| 2R | 25286936 | 2R | 13046881..13047218 | 344..7 | 1300 | 92.3 | Minus |
Blast to na_te.dros performed 2014-11-27 21:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..290 | 910..970 | 133 | 72.6 | Plus |
UFO11144.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:59 Download gff for
UFO11144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13324-RA | 1..346 | 9..355 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:45 Download gff for
UFO11144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13324-RA | 11..365 | 1..355 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:20 Download gff for
UFO11144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13324-RA | 30..384 | 1..355 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:20 Download gff for
UFO11144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13049283..13049625 | 1..344 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:45 Download gff for
UFO11144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8936788..8937130 | 1..344 | 99 | | Minus |
