UFO11146.5prime Sequence
1175 bp (1062 high quality bases) assembled on 2012-03-05
> UFO11146.5prime
CAGTCGACATGGACAGCAAGCAGCCTCCACCGTACAGTGAACAGTCCGGA
TACACTCCCGCACAAACCTATCAGCCCGGTGGCCCCACCCAGCCACCACT
GTACCCACCGATGCCGCAGCCACCGCAGTCCTCAACGGTGATCATCCAGA
CCACCACAACCTCCAACCTGGTGCCCATCGGCAGTGGACCCACCCGCATC
CGCTGTCCCTCCTGTCACGCCGAAGTACTGACCACCGTGAAGTCCACTCC
TTCCGGCAGGACGCACTGCTGGGCCCTCATCCTGTGCCTGTTCATCTGCT
GGCCGTGCGTATGCCTACCTTACTGCATGGACTCCTGCCAGAATGCCAAC
CACTACTGCCCCAACTGCAGCGCCTACATCGGCACCTACGAGAACGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTC
CATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGG
TTTTCACCGTAACACGCCACATCTTGCGATATATGTGTAGAAACTGCCGG
AATCGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCAT
GGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCG
TCTTTTCATTGCCATACGAAATCGGATGACATTCATCAGGCGGGCCAGAT
GTGAATAAGCGATAACTGGCTTATTTTCTTACGCTTAAAAGCGTTATATC
CCAGCCGAACCGGGCTCTGTTTATA
UFO11146.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42565-RB | 2577 | CG42565-RB | 89..475 | 9..395 | 1935 | 100 | Plus |
| CG13511-RB | 2577 | CG13511-RB | 89..475 | 9..395 | 1935 | 100 | Plus |
| CG13510-RC | 2577 | CG13510-RC | 89..475 | 9..395 | 1935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22657989..22658275 | 9..295 | 1435 | 100 | Plus |
| 2R | 25286936 | 2R | 22658923..22659022 | 296..395 | 500 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 21:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 214..299 | 945..1028 | 127 | 64 | Plus |
UFO11146.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:53 Download gff for
UFO11146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13510-RA | 85..481 | 9..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:30 Download gff for
UFO11146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13510-RA | 89..485 | 9..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:07 Download gff for
UFO11146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13510-RC | 89..485 | 9..407 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:07 Download gff for
UFO11146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22657989..22658275 | 9..295 | 100 | -> | Plus |
| 2R | 22658923..22659022 | 296..395 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:30 Download gff for
UFO11146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18545494..18545780 | 9..295 | 100 | -> | Plus |
| arm_2R | 18546428..18546527 | 296..395 | 100 | == | Plus |
