UFO11147.5prime Sequence
1138 bp (1020 high quality bases) assembled on 2012-03-05
> UFO11147.5prime
CAGTCGACATGGAGAAGATCTGGAAGAAGGTGTGCGAGCACCACGATGTG
CCCGAGCAGGTGGCCAACGAGTGGTTCGCCCGCATTCAGCAGCACCTGAG
CTCCGAGGATCCCGCTCGCGCCTACCACAATTGGGAGGAGATGATGCGGC
GCAAGGAGCCGCACTTGGCGGGCGTGGCCAATCCCAACATTGTGCTGGCC
GCCTTCTTCCAGTACTACCACTTCGATGGTAACCGCAGCTGTGCGGAGAA
GAACTGCGAGGTCTTTGAGGAGTTTTGCAATGATGCCGTCATCGAGGATG
ACCATGCAAAAAGCCTGGTATGTAATTTGCTGGGGCGCAAGACCCCGGAG
AACCAGTTGACCTGGTGCCATGACGACGAGGCCAACTTGCTGCAGGACGT
AGACCTGGTGGTCCTAGCTGCTTCGCCGGAGGAGTACAAGCACTATACAA
CTCTCCTTCGCTCGGAGTACGCCAATCTCGACGATGCCACCTACAAGGCC
ATGCGCATCAAGGTGCTGGAGACCCTGCTGATGATTCCCTCCATCTACGC
CACTGGAGACTACCACGACAAGTACGAAGAGCTAGCCCGCGCCAACATAC
GCAACGAGATCAGCGAGCTGAAGAAGCAGGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCC
AGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAAGCATTCTGCCGACATGTAAGCCATCACAAACGGCATGATG
ACTGATCGCAGCGGCATCAGCACTTGTCGCCTTGCGTATATATTTGCCCA
TGTGAAACGGGGGGCGAAGAAGTGTCATATGCCACGTTTAAATCAACTGG
TGAACTCACCCAGATGCTGAAACGAAAAACTTATTCTCATAACGTTAGAA
ATAGCAAGTTCACGTAACCGCCCCACTCTGCAATATAT
UFO11147.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42361-RA | 1001 | CG42361-RA | 122..742 | 9..629 | 3105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24607794..24608085 | 9..300 | 1460 | 100 | Plus |
| 2R | 25286936 | 2R | 24608319..24608529 | 419..629 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 24608143..24608261 | 300..418 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:10:48 has no hits.
UFO11147.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:53 Download gff for
UFO11147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42361-RA | 99..725 | 2..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:32 Download gff for
UFO11147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42361-RA | 119..745 | 2..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:08 Download gff for
UFO11147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42361-RA | 119..745 | 2..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:08 Download gff for
UFO11147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24607791..24608084 | 2..299 | 98 | -> | Plus |
| 2R | 24608143..24608261 | 300..418 | 100 | -> | Plus |
| 2R | 24608319..24608532 | 419..633 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:32 Download gff for
UFO11147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20495314..20495607 | 2..299 | 98 | -> | Plus |
| arm_2R | 20495666..20495784 | 300..418 | 100 | -> | Plus |
| arm_2R | 20495842..20496055 | 419..633 | 99 | == | Plus |
