UFO11149.5prime Sequence
1143 bp (1013 high quality bases) assembled on 2012-03-05
> UFO11149.5prime
CAGTCGACATGTGTAAATCGTGTGAGGAACAACCAGTTCGGTGCTGCTCA
ATTTTCTATGCCGCTTTCTGCATTTCATGCGGTCTCTTCATGCTCATTTT
TTCGATTCACAATGTAATACTTTTGAAAAGCTCTATTACAGTCGTGGATT
TTTATTTGCATATGCATGGTGCTGACATGTCTCCCTCAACTTTCCGCATC
CTTTACTCGATGGATGTGATTTTTGCCCTTTCGTACGTCATTGCTGGAAC
TTTACTAGCTGTTGGAATCCACCTGAACTCAAAGGGGGTCTTCTTCGCTG
GCAAGATCATAAGCTATTTCTTTCCAATATATAACATCCTTTATGTATTT
CCTTTAATTGTGCACATTGCCGCCACAGTGAAATTATGCAGATATCTTAA
AGAGAACTTTAATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGA
AACTCACCCAGGGATTGGCTGAGACGAAAAAACATATTCTCAATAAACCC
TTTAGGAAATAGCCAGGTTTTCACCGTACACGCACATCTTGCGAATATAT
GTGTAGAAACTGCCGGAAATCGTCGTGGTATCACTCAGAGCGATGAAAAC
GTTCAGTTTGCTCATGAACGTGTAACAAGGGTGACACTATCCCATATCAC
CAGCTCACGTCTTTTCATTGCATACGAAAGTCGGATGGACCATCATCAGG
CGGCAGATGGCAATAAGCGAGATAAGCTGGGCCTATTTTCCTT
UFO11149.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42393-RA | 1142 | CG42393-RA | 112..516 | 9..413 | 2025 | 100 | Plus |
| CG32192-RC | 983 | CG32192-RC | 386..499 | 297..410 | 225 | 80.9 | Plus |
| CG32192-RB | 992 | CG32192-RB | 395..508 | 297..410 | 225 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18042844..18043110 | 9..275 | 1335 | 100 | Plus |
| 3L | 28110227 | 3L | 18043185..18043267 | 275..357 | 415 | 100 | Plus |
| 3L | 28110227 | 3L | 18043326..18043386 | 353..413 | 290 | 98.4 | Plus |
| 3L | 28110227 | 3L | 18040784..18040843 | 297..356 | 195 | 88.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:11:19 has no hits.
UFO11149.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:39:00 Download gff for
UFO11149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42393-RA | 112..522 | 9..421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:48 Download gff for
UFO11149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42393-RA | 112..522 | 9..421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:23 Download gff for
UFO11149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42393-RA | 112..522 | 9..421 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:23 Download gff for
UFO11149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18042844..18043110 | 9..275 | 100 | -> | Plus |
| 3L | 18043186..18043267 | 276..357 | 100 | -> | Plus |
| 3L | 18043331..18043386 | 358..413 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:48 Download gff for
UFO11149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18035944..18036210 | 9..275 | 100 | -> | Plus |
| arm_3L | 18036286..18036367 | 276..357 | 100 | -> | Plus |
| arm_3L | 18036431..18036486 | 358..413 | 100 | == | Plus |
