UFO11150.5prime Sequence
1121 bp (1018 high quality bases) assembled on 2012-03-05
> UFO11150.5prime
CAGTCGACATGAAATTCGCAATTGTTCTACTGGCGGCCAGCATTGCCTGC
ATCAGTGCACAGGGCCCTGGAGCTACTGTTGGAAATCCCCTTGCCGGAAA
TCCCTTTGCCGCCGCCAATCCGTATGCGGCTGCCTTTAATCCCTTCCTAA
ATGGAATTTTCGGAGGTGCTGGCACAGGAGCTGCCGCCGGTGTAGCCGCT
CCCGTGGCACCGTCTGCTCCCTTTGGAGGCGCCTCGATTTCCTCATTCTT
CCAGTCGATAGTCCTGCAACGCGAAGCCGAGCGTCTGCTCTCCCAGCCTG
ACTTTCCCGCCGACCTGGCGGAGCGCGTCCTGGATGTGGTGGCCACCTCG
GAGGAGTCGATCAGTGGCTGCAACAACGCCACTTTGCCCTGGCTGCAGAT
ACGCTGTGTCAAGCCTCTGCTGACCACGGCCAAGAACCAGCTGAAGGCCA
TCGATGACGAGTGGCAGGCCCGTTTGGCCGCCACCGCCAGTCCCACAGGA
GCAGCTGCTGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCG
GCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTTGAAACG
GGGGCGAAGAGTGTCCATATTGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGCTGAGACGAAAAACATAATTCTCATAAACCCTTTAGG
AATAGCAGTTTTCACGGTACACCGCCACATCTGCATAATTGTGTAGAACT
GCGAATCGTCCTGTATTCATTCGAGCGAGAAACGTCCAGTTGGCTCAATT
GAATCGTGTACAAGGTGAAAC
UFO11150.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14292-RA | 648 | CG14292-RA | 50..553 | 9..512 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18905028..18905479 | 512..61 | 2260 | 100 | Minus |
| 3R | 32079331 | 3R | 18905552..18905606 | 63..9 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:11:23 has no hits.
UFO11150.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:39:01 Download gff for
UFO11150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14292-RA | 47..560 | 6..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:50 Download gff for
UFO11150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14292-RA | 47..560 | 6..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:25 Download gff for
UFO11150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14292-RA | 47..560 | 6..520 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:25 Download gff for
UFO11150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18905028..18905477 | 63..512 | 100 | <- | Minus |
| 3R | 18905553..18905609 | 6..62 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:50 Download gff for
UFO11150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14730750..14731199 | 63..512 | 100 | <- | Minus |
| arm_3R | 14731275..14731331 | 6..62 | 98 | | Minus |
