UFO11151.5prime Sequence
1146 bp (1027 high quality bases) assembled on 2012-03-05
> UFO11151.5prime
CAGTCGACATGTTCAAGTTTGTGATGATTCTCGCCGTTGTGGGAGTGGCT
ACCGCCCTAGCCCCAGTTTCCCGCTCCGATGATGTACACGCTGATGTCCT
TTCCCGATCGGACGACGTTCGTGCCGACGGATTCGACTCCAGCCTGCACA
CCTCAAACGGAATCGAGCAGGCCGCCAGCGGTGATGCCCATGGCAACATC
CACGGCAACTTCGGCTGGATCTCACCCGAGGGCGAGCACGTTGAGGTAAA
GTACGTCGCGAATGAAAACGGATACCAGCCCTCGGGAGCCTGGATCCCCA
CTCCTCCTCCAATCCCAGAGGCCATCGCCCGCGCCGTTGCCTGGCTGGAG
TCTCACCCCCCAGCACCCGAGCACCCCCGTCATCACGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGA
AAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAAGGTTTTCACC
GTAACACGCCACATCTTGCGAATATATGTGTAGAACTGCCGGAAATCGTC
GTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTGCTCATGGAAACGT
GTAACAGGGTGAACACTATCCATATCACAGCTCACGTCTTTCATTGCATA
CGAAATCGATGAACATTCATCAGGCGGGCCAGTTGTAATAAGGCGGAATA
AACTTGGGCCTATTTCCTAACGGCCTTAAAGCGTAATTCCAGCTGA
UFO11151.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp2-RB | 927 | CG8697-RB | 251..630 | 7..386 | 1900 | 100 | Plus |
| Lcp2-RA | 540 | CG8697-RA | 41..420 | 7..386 | 1900 | 100 | Plus |
| Lcp1-RB | 1065 | CG11650-RB | 117..432 | 71..386 | 1295 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8434094..8434459 | 386..21 | 1830 | 100 | Minus |
| 2R | 25286936 | 2R | 8430748..8431063 | 386..71 | 1295 | 94 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:11:26 has no hits.
UFO11151.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:39:02 Download gff for
UFO11151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp2-RA | 35..420 | 1..386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:52 Download gff for
UFO11151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp2-RA | 35..420 | 1..386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:26 Download gff for
UFO11151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp2-RA | 35..420 | 1..386 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:26 Download gff for
UFO11151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8434094..8434459 | 21..386 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:52 Download gff for
UFO11151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4321599..4321964 | 21..386 | 100 | <- | Minus |
