UFO11154.5prime Sequence
1146 bp (1022 high quality bases) assembled on 2012-03-05
> UFO11154.5prime
CAGTCGACATGTATGTGAAATATCCCATGGCTGAGGTGCAGTTGGTGAAC
GATCTTCTCCTCGATCTGCGGCACATGAAAAAAGATTGTCTGGAACTGCT
GCAGCGCAAGGTGGACGATCTGTCAGATACACAGAATATAGCTGAGGATC
GGACAACCCGCACCAAGACCGAATATGCAGTCCTTCAGGCGCGTTATCAC
ATGCTCGAAGAGCAGTACCGAGAGTCGGAACTGCGTGCCGAGGAGCGTTT
GGCAGAGGAGCAGAAGCGGCACCGCGAGATTTTGGCCCGCGTGGAGCGTG
AAGCCTCGCTGCAGAACGAGAACTGCCAGATGAAGATCCGTGCCACCGAG
ATCGAGGCAACGGCACTGCGGGAAGAAGCCGCCCGACTGCGTGTCCTGTG
TGACAAGCAGGCCAATGACCTCCATCGCACCGAGGAACAGTTGGAGCTGG
CGCGCGACCAAATCGGCGTCCTGCAACAGGAGCACGAGGAGCAGGCACAG
GCACTGCGCCGCCACGAACAGGAGAAGAAGTCCACCGAGGAGCTGATGCT
GGAGCTGGGCCGGGAACTGCAGCGTGCTCGCGAGGAGAGTGGAGCCCGGG
CAATGCCGACCACATCGCCGGAGAGCATAAGACTGGAGGAGCTGCATCAG
GAGCTCGAGGAGATGCGCCAGAAGAACCGAACCCTCGAAGAACAGAACGA
GGAGCTGCAGGCCACGATGCTGACCAACCAGGCCACCATGCTGACAAATG
GCGTGAGCAGGTCGCCATCTGCTGAACGGAACACTCAACAGTTTGGCTCA
GAGCTCGAGGAGATGTCACAAGCCCAGCTACAACAGGCCTTCCAGGAAAA
GGAGGATGAAAATGTTCGGCTTAAGCACTATATTGATACCATTCTACTCA
ACATCGTGAGAACTATCCTCAATTGCTGGAAGTCAAGCCCATGGAGCGAA
AGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGTAGTGTCATA
TCATATCATAATCATATCATATCACACTAGCTAGGAAATCCTGGTTCATG
ACTAGTGCTGATTCTCCCCAATAAAACGCCGGCGCACGACGTTCTGAACA
ATCGAATGGATTCGAGGTCATACTGAATCTATCACAGAATCCAAGC
UFO11154.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-RD | 2448 | CG33991-RD | 303..1250 | 9..952 | 4640 | 99.6 | Plus |
| nuf-RF | 3099 | CG33991-RF | 1035..1901 | 90..952 | 4235 | 99.5 | Plus |
| nuf-RE | 3233 | CG33991-RE | 1169..2035 | 90..952 | 4235 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14230654..14231112 | 223..681 | 2295 | 100 | Plus |
| 3L | 28110227 | 3L | 14230176..14230310 | 90..224 | 675 | 100 | Plus |
| 3L | 28110227 | 3L | 14231177..14231325 | 682..827 | 595 | 98 | Plus |
| 3L | 28110227 | 3L | 14231924..14232052 | 825..952 | 595 | 99.2 | Plus |
| 3L | 28110227 | 3L | 14230026..14230106 | 9..89 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:11:32 has no hits.
UFO11154.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:39:03 Download gff for
UFO11154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RD | 294..1248 | 1..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:55 Download gff for
UFO11154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RD | 296..1250 | 1..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:28 Download gff for
UFO11154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RD | 296..1250 | 1..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:28 Download gff for
UFO11154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14231177..14231325 | 682..827 | 97 | -> | Plus |
| 3L | 14231927..14232052 | 828..952 | 99 | == | Plus |
| 3L | 14230019..14230106 | 1..89 | 95 | -> | Plus |
| 3L | 14230176..14230310 | 90..224 | 100 | -> | Plus |
| 3L | 14230656..14231112 | 225..681 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:55 Download gff for
UFO11154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14223276..14223410 | 90..224 | 100 | -> | Plus |
| arm_3L | 14223119..14223206 | 1..89 | 95 | -> | Plus |
| arm_3L | 14223756..14224212 | 225..681 | 100 | -> | Plus |
| arm_3L | 14224277..14224425 | 682..827 | 97 | -> | Plus |
| arm_3L | 14225027..14225152 | 828..952 | 99 | == | Plus |
