UFO11160.5prime Sequence
1093 bp (969 high quality bases) assembled on 2012-03-05
> UFO11160.5prime
CAGTCGACATGGAGCGGGAAATTTACAGTGCGGAATACTTCGAGAGAGCT
TTGGCGAGAGCTTATGGTTGTGAAATGCTTCGCGTTGAGAACTTTCACAT
CAAGGCGGTGAGCCAGAAGGGCGAGAACTTTTGCAGCGTCATCTACCGGG
TGGCGTTGGTCTTTCGCAGGTCACCCGATGGCGCTCTCGAATCAGGAAAA
TATATTCTCAAGGATCTGCTGCCCGCCGCCGCTGCACTGGGCACCAACGA
AAAGGATATGTTCGAGGTACTCCTGCCTGCCATGCAAGCCATTCTTGAAG
AAGCTCCAAAGGAGATTGGCGAACACAAGCTGAGCGCAGATTGCTTGCTA
GTCGAGATATCTGCTGGAAAAGAGCTCTACATTCTGGAGGATCTGGGCGC
CCTAGGATACGAATCCTTTGATCGTCGTCAAGGCTTAAATCTGGAAGAAG
CCAAAATTTGCGTAAGGAAACTGGCTCAGTTCCACGGTGCATCCAAGGTT
TTGTACGAGAAGAAACCCGAATTGATTCAAAGGCTTTCGCCTTCTCACTA
TGCCAATGGATTGAACGATCGCTTCGCCCAGGCTCTCGTCTTGGAGGGCG
CCGAATATGCCGCAGAAGCGTTTGCCGAAGAACTTCCGGAAATATCAAAG
AAAATGAAGGCTCAAATACCGAAAGCATATACGAAAAGAATGCGAGATGT
CGTTGATCCAAACAAGTCATCATTGAATGCAGTTATTCATGGTGATCCCT
GGTTTAAATAACATTATGTTTGATTTCGTTAATAAGAAGGCAACACTTGT
GGATTTCCAAAACTGTTACTGGGGTAGCCCGGGCCATAGATCTCTACTTT
CTATTTTACACCAGCCTCAAGCCTGAATTATTGCTAAATAATCAAGATGA
GCTTCTGATTACTATTTCGACATCTTCTGGAAACCCTGCGCATTGCGCTA
TAAGACACACTGCCCACTTTGTAGTAAGATGAGATGAACGTGTTTGTTTA
TGATATTACACTGTAGTCTGTGACTCCCATATGTTGGCTCCCCTGAGCAG
TGTGATTTCGGTTCCACACCTTCGTAGATCGGATGCTATGTTT
UFO11160.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32195-RC | 1563 | CG32195-RC | 143..1248 | 9..1092 | 4865 | 97.4 | Plus |
| CG32195-RB | 1701 | CG32195-RB | 281..1386 | 9..1092 | 4865 | 97.4 | Plus |
| CG32195-RA | 4876 | CG32195-RA | 281..1386 | 9..1092 | 4865 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18114823..18115282 | 341..801 | 2255 | 99.8 | Plus |
| 3L | 28110227 | 3L | 18114426..18114757 | 9..340 | 1660 | 100 | Plus |
| 3L | 28110227 | 3L | 18115344..18115519 | 799..970 | 585 | 96.6 | Plus |
Blast to na_te.dros performed 2014-11-27 21:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 2232..2382 | 1033..880 | 115 | 55.8 | Minus |
UFO11160.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:59 Download gff for
UFO11160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32195-RA | 279..1384 | 9..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:46 Download gff for
UFO11160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32195-RA | 281..1386 | 9..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:21 Download gff for
UFO11160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32195-RA | 281..1386 | 9..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:21 Download gff for
UFO11160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18114426..18114757 | 9..340 | 100 | -> | Plus |
| 3L | 18114823..18115279 | 341..798 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:46 Download gff for
UFO11160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18107526..18107857 | 9..340 | 100 | -> | Plus |
| arm_3L | 18107923..18108379 | 341..798 | 99 | -> | Plus |
