UFO11162.5prime Sequence
1145 bp (1040 high quality bases) assembled on 2012-03-05
> UFO11162.5prime
CAGTCGACATGGCGGCCAGTAGCGGTGATTCCAAAATGACCCAACAGAGG
CCAGCTTTCGACTCCAATGCGATGACGCTGACGCGTTTCGTGCTGCAGGA
GCAGCGAAAGTTCAAGAGCGCCACTGGCGATCTCTCCCAGCTGCTCAACT
CCATCCAGACCGCCATCAAGGCTACATCATCCGCGGTGCGGAAGGCAGGT
ATCGCCAAGCTCCATGGATTCGCTGGCGACGTGAATGTCCAAGGCGAGGA
GGTCAAGAAACTGGACGTGCTCTCCAACGAGCTGTTCATCAACATGCTGA
AGTCATCCTATACCACATGTCTAATGGTTTCCGAGGAGAACGAGAATGTG
ATCGAGGTGGAAGTGGAGAAACAGGGCAAATACATCGTGTGCTTCGATCC
CTTGGATGGATCCTCCAACATAGACTGCCTGGTGTCGATCGGTTCAATCT
TCGCCATTTACCGCAAGAAAAGCGATGGTCCGCCCACAGTGGAGGATGCA
CTGCAGCCCGGAAATCAGCTGGTGGCCGCCGGCTACGCGCTATACGGTTC
GGCCACAGCAATTGTCCTGGGTCTGGGTTCGGGAGTGAATGGCTTCACTT
ATGACCCGGCCATCGGAGAGTTCGTGCTGACCGATCCCAACATGCGGGTG
CCGGAGAAGGGAAAGATATACTCTATCAACGAGGGATATGCAGCGGATTG
GGAGGATGGTGTCTTCAACTACATTGCGGCCAAGAAGGATCCCGCCAAGG
GAAAGCCCTATGGAGCGCGGTACGTGGGTTCCATGGTCGCGGATGTGCAT
CGCACCATTAAATACGGCGGCATCTTTATCTATCCGGCAACAAAGTCCGC
TCCCAGCGGAAAACTTCGTCTGCTGTACGAGTGCGTGCCCATGGCCTATC
TGATGATCCAGGCTGGAGGTCTGGCCAGCGACGGAAGATCAGCATTTTGG
ACATTGTGCCAGAAGATCCACGAGCGCAGTCCCATATTCCTAGGATCCAG
GTCGACGTGGAGGAGGCACTTAGCTACTAAAGGCAGCTTTCTAGACCATC
GGTTTGGCCGCCCGGACCAGTAGTGGTCATAATCATATCCTATCATATCC
TAATCAACCTGGCTTAGATCCTGGTACTGACTAGGCTTGATCCCA
UFO11162.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fbp-RE | 1202 | CG31692-RE | 118..1141 | 9..1028 | 5015 | 99.5 | Plus |
| fbp-RA | 1130 | CG31692-RA | 66..1069 | 29..1028 | 4915 | 99.5 | Plus |
| fbp-RD | 1185 | CG31692-RD | 140..1124 | 48..1028 | 4820 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19761648..19762308 | 1028..372 | 3125 | 99.2 | Minus |
| 2L | 23513712 | 2L | 19762487..19762831 | 375..31 | 1725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:11:41 has no hits.
UFO11162.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:39:05 Download gff for
UFO11162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbp-RB | 111..1149 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:15:01 Download gff for
UFO11162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbp-RE | 113..1151 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:33 Download gff for
UFO11162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbp-RE | 113..1151 | 1..1039 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:33 Download gff for
UFO11162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19761638..19762305 | 375..1039 | 98 | <- | Minus |
| 2L | 19762488..19762831 | 31..374 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:15:01 Download gff for
UFO11162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19761638..19762305 | 375..1039 | 98 | <- | Minus |
| arm_2L | 19762488..19762831 | 31..374 | 100 | <- | Minus |
