UFO11163.5prime Sequence
1124 bp (1025 high quality bases) assembled on 2012-03-05
> UFO11163.5prime
CAGTCGACATGGAGTACGTTCAGTTCAAAAACGGATCCCCAGTCTACTAC
AAGGAGCAGCCAGACCTCAATGAGTGCATTCAATACCAACCCTACCGTAC
AACTCCGCTGGTCCTGCCCGGCGCCAAAGTGAAGAAGGATGCGCCCACGA
CAGAGTCCTACTTGAGGCACTACCCCAACCCGGCTGTGCGCGCCCACCCA
GGACACGACTACCATGACAGTATCATGAAGCAGCGCGTGGCCGACACCAT
GCTGCACAAGGTGGTCGGTTCGGAAGCCGACACTGGCCGCGTCTTCCACA
AGCAATTCAACTCGCCCATTGGCCTGTACTCCAACAACAACATCGAGGAC
ACCATCAGATCCACAGTTCCAAACCAGTATCAGCGCCAGTATCCCGGCCG
CCGTACAATGTGGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAA
ACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTT
TAGGGAAATAGGCCAGGTTTCACCGTACACGCCACATCTTGCGAATATAT
GTGTAGAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAACG
TTTCAGTTGCTCATGAAACGTGTACAGTGAACACTATCCCATTCACCAGC
TCACCGTCTTTCATGCAACGAATCGATGACATCTCAGGCGGGCAGATGTA
TAAGCCGATACCTTGGCTATTCTT
UFO11163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zasp66-RH | 1120 | CG6416-RH | 173..577 | 9..413 | 2025 | 100 | Plus |
| Zasp66-RG | 786 | CG6416-RG | 173..536 | 9..372 | 1820 | 100 | Plus |
| Zasp66-RI | 1280 | CG6416-RI | 173..534 | 9..370 | 1810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8634579..8634785 | 86..292 | 1020 | 99.5 | Plus |
| 3L | 28110227 | 3L | 8630555..8630635 | 9..89 | 405 | 100 | Plus |
| 3L | 28110227 | 3L | 8635002..8635081 | 291..370 | 400 | 100 | Plus |
| 3L | 28110227 | 3L | 8638157..8638198 | 371..412 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:11:44 has no hits.
UFO11163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:39:06 Download gff for
UFO11163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp66-RH | 208..615 | 9..417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:15:03 Download gff for
UFO11163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp66-RH | 173..580 | 9..417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:34 Download gff for
UFO11163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp66-RH | 173..580 | 9..417 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:34 Download gff for
UFO11163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8630555..8630635 | 9..89 | 100 | -> | Plus |
| 3L | 8634583..8634783 | 90..290 | 100 | -> | Plus |
| 3L | 8635002..8635081 | 291..370 | 100 | -> | Plus |
| 3L | 8638157..8638198 | 371..412 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:15:03 Download gff for
UFO11163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8623655..8623735 | 9..89 | 100 | -> | Plus |
| arm_3L | 8627683..8627883 | 90..290 | 100 | -> | Plus |
| arm_3L | 8628102..8628181 | 291..370 | 100 | -> | Plus |
| arm_3L | 8631257..8631298 | 371..412 | 100 | == | Plus |
