UFO11167.5prime Sequence
1135 bp (965 high quality bases) assembled on 2012-03-05
> UFO11167.5prime
CAGTCGACATGGTTTTGCTAGACAATTCGAACTTTATCCTGCGCCTGGAG
AAGATCGCAAATGCGGCCAAGAAGGACTCCTCCTTCACGCTGACGTTCAA
GCGATATGATGGCAACGATAAGCCCGTGCCGAGGGAAGGACGGCCACCGC
TGCCCAAGCCGGAGACCTACATGTGCCTGATGCGCGCCCAGTCCAAGTCC
CAAAAAATTTCCACCGTTGTCCGGCAGGAGGATGTGCCCGCCATGATGAG
CATGTACTCGCAGTTCATGAAGAGCAAGATGGACGGGCTAAAGCGGGTTA
AGAAAGTCAAAAGCAAGGCCAAGGCGACAAAGGGTGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
AATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCC
ACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAA
AAACATATTCTCAATAAACCCTTTAGGGAAAATAGGCCAGGTTTTCACCG
TAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTC
GTGTATTCACTCCAGAGCGATGAAAACGTTCAGTTTGCTCATGGAAACGG
TGTAACAGGGTGAACACCTATTCCATATCCACCAGCTCCACGTCTTTCAT
TGCCATAACGAAATTCCGGATGAAGCATTCTCAGCGGGCAGAATGTGATA
AGGCCGGAATAAACTTGTGCTTATTTTCTTTACCGTCTTAAAAGGCCGAT
ATATCCAGCTGACCGGTCTGGTTATAGGTACATGG
UFO11167.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp14-RB | 464 | CG5417-RB | 51..381 | 5..335 | 1640 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20580553..20580681 | 207..335 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 20580390..20580490 | 106..206 | 505 | 100 | Plus |
| 3R | 32079331 | 3R | 20580249..20580325 | 33..109 | 370 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:11:54 has no hits.
UFO11167.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:39:08 Download gff for
UFO11167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp14-RB | 40..375 | 1..339 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:15:08 Download gff for
UFO11167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp14-RB | 49..384 | 1..339 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:38 Download gff for
UFO11167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp14-RB | 49..384 | 1..339 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:38 Download gff for
UFO11167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20580553..20580681 | 207..335 | 100 | == | Plus |
| 3R | 20580249..20580321 | 33..105 | 100 | -> | Plus |
| 3R | 20580390..20580490 | 106..206 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:15:08 Download gff for
UFO11167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16405971..16406043 | 33..105 | 100 | -> | Plus |
| arm_3R | 16406112..16406212 | 106..206 | 100 | -> | Plus |
| arm_3R | 16406275..16406403 | 207..335 | 100 | == | Plus |
