UFO11172.5prime Sequence
1102 bp (1021 high quality bases) assembled on 2012-03-05
> UFO11172.5prime
CAGTCGACATGCTCAAGAACTGGACAATAAATACGTTCCTTTTGGTTTCG
TTTCTTTGTAGTGCGACTGGGCAAAATGAAGGAGGAGCACCTGGAATATT
CAACGGAATGTCATTCACGGAAAATCTTCAACCAGACCCAAATCAAGTTT
GCGGCATGAGCAATCCAAATGGCTTGGTGGCCAATGTGAAGGTGCCCAAA
GATTACTCCACACCTGGCCAATTTCCATGGGTGGTTGCCCTTTTCAGTCA
GGGAAAATACTTTGGGGCCGGTTCTTTGATTGCCCCAGAAGTAGTCCTTA
CAGCGGCTAGCATTGTGGTGGGCAAGACTGATGCGGAAATTGTGGTGAGA
GCAGGCGAATGGAATACGGGACAACGCAGTGAATTCCTACCGTCGGAGGA
TCGTCCGGTGGCCAGAGTTGTGCAACACAGGGAGTTTTCGTATTTATTGG
GAGCCAATAACATTGCCCTTCTGTTCCTAGCCAACCCATTTGAGTTGAAA
AGCCACATCCGAACCATCTGCTTGCCCAGCCAGGGAAGGTCCTTCGATCA
GAAGCGCTGCTTGGTGACCGGATGGGGAAAGGTGGCATTCAACGATGAAA
ATTACTCAAATATCCAAAAGAAAATCGAACTGCCGATGATTAACAGGGCG
CAGTGCCAGGATCAGTTGAGAAACACCAGATTGGGCGTCTCGTTTGATCT
GCCTGCTAGTCTGATATGCGCCGGCGGCGAGAAAGGATGCGGGAGACTGC
CTCGGCGACGGAGGATCCGCTCTATTCTGCCCCATGGAGGCGGACCCATC
GCGCTATGAGCAGGCTGGCATCGTTAACTGGGGCATCGGCTGTCAAGAGG
AAACGTTCCAGCAGTCTACACAATGTTGAAATTTTTCGGGATTGGATCTA
TGAGCACATGGCCCAGACTCCAACAGTGTCCATTCGCTGCTGGTCAGTTA
CCATCGAACTATAAACAGAGCAGCTTTCTAGACCATTCGTTGCGCGCGGG
CCCAAGTTAGTGTCATATCATATCATATCATAATCATAATCACACTAGGC
CTAGGAGAATCCTGGTCCATGACGTATGTGCTTGGAATTTCTCCCCCATA
AA
UFO11172.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14990-RA | 1072 | CG14990-RA | 32..995 | 8..968 | 4685 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4093383..4094267 | 87..968 | 4165 | 99.3 | Plus |
| 3L | 28110227 | 3L | 4093238..4093317 | 8..87 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:11:35 has no hits.
UFO11172.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:39:03 Download gff for
UFO11172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14990-RA | 28..1007 | 1..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:57 Download gff for
UFO11172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14990-RA | 27..1006 | 1..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:30 Download gff for
UFO11172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14990-RA | 27..1006 | 1..977 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:30 Download gff for
UFO11172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4093233..4093316 | 1..86 | 95 | -> | Plus |
| 3L | 4093383..4094267 | 87..968 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:57 Download gff for
UFO11172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4093233..4093316 | 1..86 | 95 | -> | Plus |
| arm_3L | 4093383..4094267 | 87..968 | 99 | == | Plus |
