UFO11174.5prime Sequence
1145 bp (1053 high quality bases) assembled on 2012-03-05
> UFO11174.5prime
CAGTCGACATGTCGTCGGAGCAGCCGGAGAACACCAGCTACGAGCAGGAA
TGCCAACGGGCGGAGCTGCTGGGCCTCCAGCCACCGGATCCCGCGGAGTT
CGAGCGCAAACGGCAGGCACGACTGGAGCACGAGTTGGCCGAGCAAGAGG
CCGCCGAGGCGGTGCTGCTGGAGCAACAAGACGAGAGTCTGGGCAATGTG
GGCGGCAAGCTGGGCGAGCTCAATAGCATCCTGTCCAGCACGCAGCAGAA
GCTGAATCGCTTCAAGCAAACGGCATGTGGCAGTTTGACCAACATATTTG
CCCGGGCCAGCTCGGGCTCGGTGGATCTTTCGGCGGGCATTGGTAGATCG
GGCTCAATCGCCTCCACACAGGAGGAGCGTCCTCCTGTCCAGGAACAGCC
ACTGGCCAAGCCTCCGCCGACGGCTGCCGAGGTCAGCGCCGCCAAGGCGG
CCAAGCAGAAGCGCATGGACTCGCAGCTGGACAAGCTGGATGCGCTGATC
AACCAGGCGGACAACGCTCAGATAGCCATGAGTGAGCAGACACAGCAGAT
GCGCCGCCTGGCCAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAA
CGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAACTGTGAAC
TCCACCCAGGGATTGGCTGAACGAAAACATATCTCATAAACCCTTTAGGA
ATAGCAGTTTCACGTAACACGCCCACATCTTGCAATATGTGTAGAACCTG
GCCGGAATCGTCTGATTCATCGAGCGAGAACGGTTCAGTTGTCTC
UFO11174.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32544-RB | 1527 | CG32544-RB | 30..588 | 8..566 | 2780 | 99.8 | Plus |
| CG32544-RA | 1630 | CG32544-RA | 30..588 | 8..566 | 2780 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18860520..18860922 | 164..566 | 2000 | 99.8 | Plus |
| X | 23542271 | X | 18860313..18860469 | 8..164 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:11:57 has no hits.
UFO11174.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:39:09 Download gff for
UFO11174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32544-RA | 24..593 | 1..571 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:15:09 Download gff for
UFO11174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32544-RA | 24..593 | 1..571 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:40 Download gff for
UFO11174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32544-RA | 24..593 | 1..571 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:40 Download gff for
UFO11174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18860307..18860469 | 1..164 | 97 | -> | Plus |
| X | 18860521..18860922 | 165..566 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:15:09 Download gff for
UFO11174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18754340..18754502 | 1..164 | 97 | -> | Plus |
| arm_X | 18754554..18754955 | 165..566 | 99 | == | Plus |
