UFO11175.5prime Sequence
1129 bp (1039 high quality bases) assembled on 2012-03-05
> UFO11175.5prime
CAGTCGACATGCTCGTAAAAACGCTTGGCGCGCATTTTGCAGCCGGGCAA
AATGCAAAAAAATGCAGCTGCTGCGCTCTGCTGATTTCCCTGCTCTGCGT
ATTACTTCTTAGTCTAAACCCTTTACCAGTAACCAGTCATGTCACTAGCG
CCGGATCATCAACAGCCCTATCTTCCGATCCCAACCTAGTGCTGGTCAAC
AAATGTTGCGAGAAGTTCGAGATACACGTGGACCATGAGTGTCAGCAGGT
CAATGAAACGGACTACTTCCAGCCGATGTTCACCAGCTATGGAGGAGAGC
AAAACAGGCCCGTTAAGTTCAAATTCGTCATCGGGATTCCAAATTGTGGA
TCCATGCAGATGTGGCCAATATACCACTATGCTGGCAGCTCTGATAAGCT
AGTGTTACTGGATGATGGGAGGCTAAGGCATTACACCAATGCCGAAAACG
AAGCAGAGGAGCGTCATGGAATACAATCGGATTATGAGGAGGATATTGCC
GGCAGTCTGGAACCGCTATACCATGACTACGATAAGGGATTGTATTGCAT
TGACAAGGCCACTTCCAGTACTGGAGAGGAAAATGTGCTATTCGCCAACA
TTTGCTTGGCCCGCAAGGAGATCAAGTGGAGTGACTCAAACTTTCTGCTC
CGCAAAATCTTAAACCCAATTTTCCATGGCATCTCGCTTGTTATCCTGCT
GGTCATCGCCATCATCTATTTTATACTTCCTACTCTCAGAGATCTGGTTG
GTAACATTGTGACAACGATAGCCATGTGCCTTATGGTAAGCCAGGCAGCA
GACCTTGTCAGAATTTTCACCGAGCTGACCAGCCATGTGAGCTTCATTGT
GGCGGACATTATCCTGTGCTTCAGCCTCTTGGCAGCTTTCTTCTGGCTGA
ACAGTTTCGGTTTTACATTTGGAGACCTTTCGTTCGAGGAACGTCTTCCT
GCGAGTCACGGACGCAGAGTACTGCTATTATCTGCGTATGCTTGGGATGC
ACAGCACGATGGCTGCACTGCTGTCTTCGCACAATTTCTCTTCGACGCGA
ATCTACAACAGAAGCACATGGTGGGGCGAGCAGAGACGATCGCTGCCTAG
CCATATTGCATATCTTTGCTCATGCTGGA
UFO11175.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl5-RA | 1949 | CG6965-RA | 334..1459 | 9..1121 | 5120 | 98 | Plus |
| mthl5-RB | 1952 | CG6965-RB | 334..1462 | 9..1121 | 5080 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11886583..11886835 | 261..9 | 1265 | 100 | Minus |
| 3R | 32079331 | 3R | 11884566..11884886 | 1048..737 | 1130 | 96 | Minus |
| 3R | 32079331 | 3R | 11884942..11885125 | 739..556 | 920 | 100 | Minus |
| 3R | 32079331 | 3R | 11885180..11885351 | 558..387 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 11885415..11885540 | 386..261 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:12:00 has no hits.
UFO11175.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:39:09 Download gff for
UFO11175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl5-RA | 331..1464 | 9..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:15:12 Download gff for
UFO11175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl5-RA | 334..1467 | 9..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:42 Download gff for
UFO11175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl5-RA | 334..1467 | 9..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:42 Download gff for
UFO11175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11886583..11886835 | 9..261 | 100 | | Minus |
| 3R | 11884479..11884883 | 740..1128 | 93 | <- | Minus |
| 3R | 11884942..11885123 | 558..739 | 100 | <- | Minus |
| 3R | 11885181..11885351 | 387..557 | 100 | <- | Minus |
| 3R | 11885415..11885539 | 262..386 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:15:12 Download gff for
UFO11175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7710201..7710605 | 740..1128 | 93 | <- | Minus |
| arm_3R | 7710664..7710845 | 558..739 | 100 | <- | Minus |
| arm_3R | 7710903..7711073 | 387..557 | 100 | <- | Minus |
| arm_3R | 7711137..7711261 | 262..386 | 100 | <- | Minus |
| arm_3R | 7712305..7712557 | 9..261 | 100 | | Minus |
