UFO11176.5prime Sequence
1166 bp (1063 high quality bases) assembled on 2012-03-05
> UFO11176.5prime
CAGTCGACATGACGGCCGAGACAAACAAAGGACCCGTTCTGGGAATGAGG
CATGTCCAGGCGCTACTGATCTTCCTCAATATAACTACCGTATTCATAGG
CCGCCTAAATGTGGGCGTGTCTGTGGTGGCAATGACCAATGCGGAAACCA
CGAACCCGAACTTTCCGGAATACGATTGGACGGAGGCAGAGAAGTCGTAT
ATATTCTCCAGTTTCTTTTGGGGCTACATCTTGACCCAATTTATAGGTGG
CTATCTCTGCAAGCGCTTTGGAGTCAAGAGTGTAATGTTTTGGGGTGTCT
TTGTATCTGGTGTCTGCAGTGCATTGACCCCGCTCTTCATCGGTTTTGGC
GGATGGCAGGCCTACTGCGGAATTCGCGTGGTTATGGGCTTGGCACAGGG
ACTAGTTTTTCCCTGTATTCATCACCATTTGGCCAAATGGTCACCTCCGG
CGGAACGAAATCGGTTGGGAGCTCTTAGTCACACTGGGATGGAGTGCGGC
AATGTAAGTGCCATGTTCTTGAGCGGAATGATAGCCAAAAGTGCCATTGG
TTGGCCAGGAATATCATATGTCTCCGCAGGATTAGCCTTCGCCTGGTGTG
CCATTTGGTTCGTTTTTGCCGCTGACAATGCAGTGGAATCTCGTTACATA
ACCCAGGAAGAACTCCACTATATCGAATCGTCTCTGAAGCACAATGAGGA
CTATCACAAGACCGTAATTCCCGTACCATGGATGGCGATTTGGACCTCGG
CACCATTTCTTGCTCTTACGCTGACGCGTTGTTGCGCGACCTGGGGTCTG
AGCACCCTCCAGGCCCAAATCCCAACTTATATGAACGGAGTTCTGGATAT
GGACATGAAAAGCAATGCATTCTTTTCGGCATTACCATTTCTGGCCATGT
GATTATGTCGTATGTGTACCTGATAATCGCCGATGTTCTGCTCGCCGGAA
ACAGCTGAGTTTAACGGCCCTCCGGAAGACCTTCAACTCGTTGCCTTCTG
ATTCCTTGTGCCACTTTGATTGAATCGGATTCTGGATCAGGACAGAAGAC
CTGCATTGCTTTGAATGAACATCATGTTCGGTGTCACAGTGGAGCAACAT
CGAGCTCCTTGAAAACCATAGATCTATTCCCGGAATATGGCAGAATTCTA
TGGAATCTTGAATACG
UFO11176.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12490-RB | 1647 | CG12490-RB | 54..1226 | 9..1166 | 5275 | 97.7 | Plus |
| CG30265-RB | 1622 | CG30265-RB | 58..1194 | 9..1132 | 2905 | 84.6 | Plus |
| CG30265-RA | 1771 | CG30265-RA | 207..1343 | 9..1132 | 2905 | 84.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22835185..22836199 | 167..1166 | 4125 | 96.9 | Plus |
| 2R | 25286936 | 2R | 22833119..22834097 | 167..1132 | 2525 | 86.9 | Plus |
| 2R | 25286936 | 2R | 22837915..22838649 | 167..901 | 1620 | 81.4 | Plus |
| 2R | 25286936 | 2R | 22837720..22837859 | 29..168 | 700 | 100 | Plus |
| 2R | 25286936 | 2R | 22834990..22835129 | 29..168 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:12:04 has no hits.
UFO11176.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:39:10 Download gff for
UFO11176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12490-RB | 54..1226 | 9..1166 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:15:14 Download gff for
UFO11176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12490-RB | 54..1226 | 9..1166 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:43 Download gff for
UFO11176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12490-RB | 54..1226 | 9..1166 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:43 Download gff for
UFO11176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22834992..22835128 | 31..167 | 100 | -> | Plus |
| 2R | 22834700..22834721 | 9..30 | 100 | -> | Plus |
| 2R | 22835186..22836199 | 168..1166 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:15:14 Download gff for
UFO11176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18722223..18722244 | 9..30 | 100 | -> | Plus |
| arm_2R | 18722515..18722651 | 31..167 | 100 | -> | Plus |
| arm_2R | 18722709..18723722 | 168..1166 | 97 | | Plus |
