UFO11185.5prime Sequence
833 bp (832 high quality bases) assembled on 2012-03-05
> UFO11185.5prime
CAGTCGACATGTCGCAACAGCGCTCCACAGAGCAGATTGCAGCTAGCAAC
AACAACACCAGCGATGTAATAGCGCTGGACGACGACGAGGATACGGATGT
GCAATTCGTTGCAGCTCTGCGTCCCACCGCACCAGTCATCGATCTTTGCG
TCTCGCCCTCCACTTCTGCTGCTGCTGCTGCGGCGGCGGCAGCTGCAGCC
CACTCAGGAGGCGGAAGTGGCGAGGATCCGGCGGTTGGATCCGCATCTGG
AGCTGCTGCTTCGGATACCGATTCACTTGCTTCTTCGCCTGACGAAGGAG
CGTTAGCCACCGGTGTGGATGCAGCGGCAGCCGTTTCTGGCGAAGATTCC
CCCTCTGCAGCGGCCGCTGCCTTGGAGTGTCCCATCTGTTTGCAAACCTG
CATCCACCCAGCTCGTCTCCCCTGTGGCCACATCTTCTGCTTTTTGTGCG
TGAAGGGTGTTGCTTATAAGAACCGCCGTTGTGCTATGTGCCGTCGCGAG
ATTCCCGCCGAGTTCCTGGACCATCCCCAGCTGGTGAATGGCATTGAGGA
CATCTGCACCACTCGCGCGACCGAGGACGGCTTCCAGTGGTATTACGAGG
GAAGAAACGGTTGGTGGCAGTACGATGACCGCACTAGTCAGGACATCGAA
AGATGCCTTTAAGAAGGGCGACAAATCCTGTACAATTTTTGGTAGCCGGC
TACGTCTACATTGTGGACTTGGAGCAGCTAGTCAAGCAGCGCCAGAATGA
GCCCACTCGCTGCCGGAGGGTTAAGCGAGACCTAGCCACCATACCCAAAA
AGGGGGTGGCCGGTCTGCGTATCGAAGGCAACC
UFO11185.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8786-RG | 3862 | CG8786-RG | 149..972 | 8..833 | 4050 | 99.5 | Plus |
| CG8786-RC | 1667 | CG8786-RC | 149..972 | 8..833 | 4050 | 99.5 | Plus |
| CG8786-RB | 1963 | CG8786-RB | 149..972 | 8..833 | 4050 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19642352..19642668 | 324..8 | 1585 | 100 | Minus |
| 3L | 28110227 | 3L | 19640097..19640319 | 833..609 | 995 | 98.2 | Minus |
| 3L | 28110227 | 3L | 19641063..19641220 | 611..454 | 790 | 100 | Minus |
| 3L | 28110227 | 3L | 19641893..19642026 | 456..323 | 670 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 21:12:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2467 | 332..167 | 112 | 53 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2864 | 260..160 | 110 | 59.4 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1096 | 198..163 | 108 | 77.8 | Minus |
UFO11185.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:39:11 Download gff for
UFO11185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8786-RC | 138..970 | 1..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:15:20 Download gff for
UFO11185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8786-RB | 140..972 | 1..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:46 Download gff for
UFO11185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8786-RB | 140..972 | 1..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:46 Download gff for
UFO11185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19641894..19642024 | 325..455 | 100 | <- | Minus |
| 3L | 19640097..19640318 | 610..833 | 98 | <- | Minus |
| 3L | 19641065..19641218 | 456..609 | 100 | <- | Minus |
| 3L | 19642352..19642677 | 1..324 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:15:20 Download gff for
UFO11185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19633197..19633418 | 610..833 | 98 | <- | Minus |
| arm_3L | 19634165..19634318 | 456..609 | 100 | <- | Minus |
| arm_3L | 19634994..19635124 | 325..455 | 100 | <- | Minus |
| arm_3L | 19635452..19635777 | 1..324 | 99 | | Minus |
