UFO11188.5prime Sequence
1130 bp (1001 high quality bases) assembled on 2012-03-05
> UFO11188.5prime
CAGTCGACATGGTGCAGATCAAATTCCTTTTCGTCTTCCTGGCTGTGATG
ACAATTGTTGTCCTGGCCGCCAATATGGCTGATGCCGATTGCCTTTCCGG
CAAATACAAGGGTCCCTGCGCCGTCTGGGACAACGAGATGTGCCGACGTA
TTTGCAAGGAGGAGGGACATATCAGTGGCCACTGCAGTCCCAGCCTGAAG
TGCTGGTGCGAAGGATGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCG
CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTG
AAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACT
GGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAA
ACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGC
GAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAG
CGATGAAAACGTTTCAGTTTGCTCATGGAAACGGTGTAACAAGGGTGAAC
ACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCG
GGATGAGCATTCATCAGCGGGCAGATGTGAATAAAGGCCGGATAAACTTG
TGCTTATTTTTTCTTTACGGTCTTTAAAAGCCGTAATATCCAGCTGACGG
TCTGTTATAAGGTACAATGAGCACTGACTGAAATGCCCTCAAATTGTTCT
TTACGATGCATGGATATATCAACGGTGGCATATCAGTGAATTTTCTCCAT
TTAACTTCTAGTCCTGGAGATCCTAACTTC
UFO11188.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drsl2-RA | 333 | CG32279-RA | 27..236 | 9..218 | 1050 | 100 | Plus |
| Drs-RA | 387 | CG10810-RA | 64..273 | 9..218 | 465 | 81.4 | Plus |
| Drsl5-RA | 364 | CG10812-RA | 56..261 | 13..218 | 445 | 81.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3314375..3314584 | 9..218 | 1050 | 100 | Plus |
| 3L | 28110227 | 3L | 3369619..3369828 | 9..218 | 465 | 81.4 | Plus |
| 3L | 28110227 | 3L | 3316836..3317041 | 13..218 | 445 | 81.1 | Plus |
| 3L | 28110227 | 3L | 3336147..3336362 | 218..9 | 280 | 76.4 | Minus |
| 3L | 28110227 | 3L | 3335582..3335718 | 218..82 | 205 | 76.6 | Minus |
| 3L | 28110227 | 3L | 3315168..3315246 | 140..218 | 200 | 83.5 | Plus |
| 3L | 28110227 | 3L | 3315771..3315843 | 140..212 | 200 | 84.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:12:16 has no hits.
UFO11188.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:39:12 Download gff for
UFO11188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dro2-RA | 19..240 | 1..222 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:15:22 Download gff for
UFO11188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drsl2-RA | 19..240 | 1..222 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:48 Download gff for
UFO11188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drsl2-RA | 19..240 | 1..222 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:48 Download gff for
UFO11188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3314367..3314584 | 1..218 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:15:22 Download gff for
UFO11188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3314367..3314584 | 1..218 | 98 | == | Plus |
