UFO11189.5prime Sequence
1158 bp (1054 high quality bases) assembled on 2012-03-05
> UFO11189.5prime
CAGTCGACATGCTGAAGCAAAACAATGGTCTGCATCTGGCTAGGCGCAAT
CTCTGGGTGGTTTGCAGTGGCCTCCGTGCCAAGGATTGCGACAGTGGCGG
TAAGGGCGGCAAGGGCAAGGAGAATGGCAAGTTTCGTACGGAGAAGGACA
CCTTCGGGGAGCTAAAGGTGCCGGCGGACAAGCTGTACGGCGCACAGACG
ATGCGCTCCAAATTGAATTTTCCCATTGGCGACATAGGCGAACGTATGCC
GATGCCGGTGATCCAGGCCATGGGCATACTGAAGAAGGCATGTGCCGAGG
TCAACAAGGATTACGGACTAGATGGCAAGGTGTCGGATGCCGTATCCTGC
GCCTGCGACGATGTCATTTCCGGCAAGCTATACAAACAGGGTCACTTCCC
ATTGGTCATCTGGCAAACCGGTTCGGGCACCCAGACCAATATGAACACCA
ACGAGGTGATCAGCAATGCGGCCATTAAGATGATGGGCGGCGAACTGGGC
AGCAAGAAGCCGGTGCATCCCAACGATCATGTGAACAAGTCGCAGAGCTC
CAACGACACCTTCCCCACGGCCATTCACATTTCGGTGGGCATGGAGCTGA
ACGAGCGGCTTGTTCCGGCGGTTACACACTTGAGGGATGCCCTCAAGTCC
AAGTCGGATGAGTTCAAGGACATCATCAAGATCGGACGCACCCACTTGAT
GGACGCAGTTCCGCTGACTTTGGGCCAGGAATTCAGCGGTTATACACAGC
AGTTGACCAACGGTCTGGAAAGGATCAAGGGCTGTCTGCCGCGCGTCTAT
GAGCTGGCTCTGGGCGGCACTGCTGTGGGTACGGGTCTGAACACACGCAA
GGGATTCGCCGAGAAGTGGCCAAGCGCATTTCGGAGCTAACCTGCTTGCC
CTTCGTGTCGGCGCCCAACAAGTTCGAGGCACTGGCTGCCCGCGATGCCA
TGGTGGAGGTGCATGGTGTGCTCAACACGATCGCCGTCAGCCTGATGAAG
ATCGCCAACGATATCCGATTGCTGGGATCGGGTCCGCGTTGGCGGTCTTG
GGCGACCTATGCTGCGGTACGAGCCCGGTAGCCTCCCATCCATGCCGCAG
GTGATCCCAACGCAATGCAAATCATTGACATGCGTGTGTTCCCAGGTGTA
GTGCATCA
UFO11189.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4095-RA | 1647 | CG4095-RA | 70..1212 | 9..1148 | 5270 | 98.1 | Plus |
| l(1)G0255-RB | 1668 | CG4094-RB | 132..1050 | 130..1052 | 1820 | 81 | Plus |
| l(1)G0255-RA | 1740 | CG4094-RA | 204..1122 | 130..1052 | 1820 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6682497..6683092 | 447..1041 | 2900 | 99.5 | Plus |
| X | 23542271 | X | 6680566..6681154 | 454..1041 | 1440 | 83.4 | Plus |
| X | 23542271 | X | 6682218..6682424 | 251..457 | 1035 | 100 | Plus |
| 3L | 28110227 | 3L | 11464301..11464987 | 1041..356 | 970 | 76.4 | Minus |
| X | 23542271 | X | 6681970..6682134 | 87..251 | 825 | 100 | Plus |
| X | 23542271 | X | 6681836..6681913 | 9..86 | 390 | 100 | Plus |
| X | 23542271 | X | 6680304..6680488 | 258..445 | 230 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:12:19 has no hits.
UFO11189.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:39:13 Download gff for
UFO11189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4095-RA | 82..1172 | 9..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:15:24 Download gff for
UFO11189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4095-RA | 70..1160 | 9..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:50 Download gff for
UFO11189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4095-RA | 70..1160 | 9..1101 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:50 Download gff for
UFO11189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6681970..6682134 | 87..251 | 100 | -> | Plus |
| X | 6682219..6682422 | 252..455 | 100 | -> | Plus |
| X | 6681836..6681913 | 9..86 | 100 | -> | Plus |
| X | 6682506..6683149 | 456..1101 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:15:24 Download gff for
UFO11189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6575869..6575946 | 9..86 | 100 | -> | Plus |
| arm_X | 6576003..6576167 | 87..251 | 100 | -> | Plus |
| arm_X | 6576252..6576455 | 252..455 | 100 | -> | Plus |
| arm_X | 6576539..6577182 | 456..1101 | 97 | | Plus |
