UFO11190.5prime Sequence
1168 bp (1034 high quality bases) assembled on 2012-03-05
> UFO11190.5prime
CAGTCGACATGGCCCTTCGCTTGACCCAGAGATTGCTGCAGACGCAGACG
CCGTTCCTCACTCGCGGCTATCCCTTGCTGGTGACCAAGGAGAAGACCGA
GGATGTGGCCCACACCAAATCGGCGCTGCAGAAGAAAGTCACGGGCACCG
ATATTCCCTCGGCACAGTACGGAGGTCGTCATGCCGTCACCATGCTGCCG
GGCGGCGGCATTGGTCCTGAACTGATGGGCTATGTGCGCGAGATCTTCCG
GTATTGCGGTGCACCCATCGATTTCGAGGTGATCGACATCGATCCCTCCA
CCGAGGGCAACGATGATCTGGACTATGCCATCACATCGATTAAGAGGAAC
GGAGTGGCACTCAAGGGCAACATCGAGACCAAGTCCCAATCCTTGACCGA
AGTCTCCCGCAACGTGGCCATCCGTAACGAGCTGGATCTGTACGTCAATG
TGGTGCACTGCAAGTCGTATCCGGGCATTCCGGCCCGCCATCACGACATT
GACGTGGTGCTCATCCGCCAAAACACCGATGGCGAGTACGCCATGTTGGA
ACATGAGTCTGTGCCCGGAATTGTGGAGAGCATGAAAGTGGTGACCGTCG
AGAATGCCGAGCGTGTGGCCCGCTACGCCTTTGAGTTCGCCCGCCAAAAC
AATCGCAAGAAGGTTACCACCATTCACAAGGCCAACATCATGAAGCTGTC
CGATGGTCTCTTCCTGGAGGTTGCCAACCGTGTGCACAAGGACTATCCCG
AACTGGAGCACAACAACATGATTATCGACAACACCTGCATGCAGTCCGTG
TCGAATCCTCACCAGTTCGACGTGATGAACATGACCAATCTGTACGGCAC
CATCGTGTCCAATGTTCTTTGCGGTTTGATGGGCGGAGCTGGCCTCATAT
CCGGCAGGAACTACGTGACCATTACGCCATCTTTGAGCCTGGCACCCGTA
ACACCGGAACCGCCATTGCCGGCAGAATATCGCCAACCCTGTGGCATGAT
CAGTGCCAGTATCGATATGTTGAACATCTGGGCCACAGAGCACGCCAATG
TTCATTCAGAGCGTCTACAGAACATTGTTCAACGATGCCATTCGCACGCC
GAATTTGGCCGCACCCACTTCCAGATACCGGAGTGGTTGAAAATATACTC
AGGATCTGGAGGGGTCCA
UFO11190.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5028-RD | 1742 | CG5028-RD | 122..1282 | 8..1161 | 5320 | 97.9 | Plus |
| CG5028-RC | 1608 | CG5028-RC | 122..1282 | 8..1161 | 5320 | 97.9 | Plus |
| CG5028-RB | 1934 | CG5028-RB | 122..1282 | 8..1161 | 5320 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25681265..25682037 | 143..915 | 3865 | 100 | Plus |
| 3R | 32079331 | 3R | 25682105..25682238 | 923..1051 | 455 | 96.3 | Plus |
| 3R | 32079331 | 3R | 25681121..25681199 | 66..144 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 25680966..25681024 | 8..66 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:12:22 has no hits.
UFO11190.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:39:14 Download gff for
UFO11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5028-RC | 149..1313 | 8..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:15:27 Download gff for
UFO11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5028-RB | 122..1286 | 8..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:52 Download gff for
UFO11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5028-RB | 122..1286 | 8..1167 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:52 Download gff for
UFO11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25680966..25681023 | 8..65 | 100 | -> | Plus |
| 3R | 25681121..25681198 | 66..143 | 100 | -> | Plus |
| 3R | 25681266..25682045 | 144..922 | 99 | -> | Plus |
| 3R | 25682105..25682291 | 923..1101 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:15:27 Download gff for
UFO11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21506688..21506745 | 8..65 | 100 | -> | Plus |
| arm_3R | 21506843..21506920 | 66..143 | 100 | -> | Plus |
| arm_3R | 21506988..21507767 | 144..922 | 99 | -> | Plus |
| arm_3R | 21507827..21508013 | 923..1101 | 93 | -> | Plus |
