UFO11195.5prime Sequence
1112 bp (992 high quality bases) assembled on 2012-03-05
> UFO11195.5prime
CAGTCGACATGACGGAGCTAAGACGAACTAATGGCCTGCACAAGCAGCAC
TCCCTGAGAGATCGACAGGTGCATCCGATGCTGCACGCCCTGGCGGATCA
CGGCTGCAACCTCAGCAGCGGTGGCAACAGTGCGGCCAGCACCACCAGCA
GTAGTACGGCCACGGCCACCACAGCACTTGGTGGTGCCGGCGGTTTGGGC
GGTCTGGGTGGCCTGAACGGTGGTGTCGGCATAACAAGTCAGCGGAGCGT
TGAGTTCGATGAGCACGACATCTTCTACGTCTCACCATCCAAGCGAAAAG
GAGCCACTTCAGTAGGTTCCTCTGGCAATGTGGTAACCTTCTCGAATTTT
GTAAGTGAACAACGCCTGACGCCCTCGTCGTCGAACCGCGGATCCCTGAA
GCGGAGCAAGGGCCGCTCCAATCAGTCCCTGTGCAGCTGCGATGCCGGCG
ACGAGGCCCAACTGGATTTGCAACCGAATGCGGCAAGGCCGCTGTACGAG
TACAGTCTGGAACGAAAGCGTAAGACACACACCTACTCCTGCGAGCAGAA
TGCGCAGATACTTATGAGACTGGAGCGCGAGCGTAATCGTAAATTATCGC
TGACTGGGATGGAAACGGGATTGGGAATCGGACTGGGAGTGGGATTGGGA
ATGGGATCTGGAGGAGGAACAGGAGGAGCCGGAGACCCTCAGAAATACAG
ACAGAGTTTTGCAACAGGCAAATGCGCTAACCAAACAGAGCGTGGCACGG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCAACCAATAAAAAAACGCCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TTCTATCAACAGAGTCAAGCGGAGCTCGATATTCAATTACGCCTCGCCCT
GCAACCCATCGCCAGTACTGTTGTTAATTCATTAGCATTCTGCCCGAACT
GTAAGCATAAAACGCATGATGACTGATTCGCAGGCGGCATCAGCCCCTTG
CCCGCCTTGCAT
UFO11195.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42750-RB | 6066 | CG42750-RB | 1852..2536 | 9..693 | 3410 | 99.9 | Plus |
| CG42750-RC | 6913 | CG42750-RC | 2092..2773 | 9..693 | 3355 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18209769..18210151 | 692..310 | 1900 | 99.7 | Minus |
| 2L | 23513712 | 2L | 18210557..18210860 | 312..9 | 1520 | 100 | Minus |
| 2L | 23513712 | 2L | 18209637..18209696 | 749..690 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:09:09 has no hits.
UFO11195.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:32 Download gff for
UFO11195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42750-RB | 1845..2542 | 1..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:39 Download gff for
UFO11195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42750-RB | 1845..2542 | 1..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:23 Download gff for
UFO11195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42750-RB | 1845..2542 | 1..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:23 Download gff for
UFO11195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18209637..18209693 | 693..749 | 100 | <- | Minus |
| 2L | 18209769..18210148 | 313..692 | 99 | <- | Minus |
| 2L | 18210557..18210867 | 1..312 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:39 Download gff for
UFO11195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18209637..18209693 | 693..749 | 100 | <- | Minus |
| arm_2L | 18209769..18210148 | 313..692 | 99 | <- | Minus |
| arm_2L | 18210557..18210867 | 1..312 | 99 | | Minus |
