UFO11201.5prime Sequence
1068 bp (926 high quality bases) assembled on 2012-04-16
> UFO11201.5prime
CAGTCGACATGCGTCGCACTTGGGTCCTGTTTTACTTATTCCTAATTGGG
TTGGCATTGGTAAAGACCACACCGAAAGAACTTCACTCAGAATCGATTTT
TGAAGATGACGTCGCTCTAAGGTCCAAGTCAATCATTACAACAACCCGAC
CACCTGTGACAATCAGGCGCGTTGTAGCCAAGTCAAAGGGTAAGGATCCA
GAAAGAACTGACCTCCACCGCAAGCACCTCACACATCACAAACATCACTC
AAAAAACAAAAAAAAGAATCCACATAATCGTGCCGAAGCGAATCGAAACA
AGGATCATAGTCCCCATGATCCCCACAAAAACCTGAAAAGAAAGGCAGAG
GCACTCCCTAAGTCAAATCAGAATATAAATGGCACTACTTCTCTGGAAGC
CAAGAGTACGTCTTTAAAAGATGTACATAAGGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCA
TGATGAACCTGAATCGCCAGCGGCATCAGCACCCTTGTCGCCTTGCGTAT
AATATTTGCCCATTGTGAAAAACGGGGGCGAGAAGTTGTCCATATTGGCC
ACGTTTAAATCAAAACTGGTTAAACTCACCAGGGATTGGCTGAGACGAAA
ACATATTCTCATAAGCCTTTAAGGAAATAGGCAGGTTTCACCGTAACACG
CCACATCCTGGCGATATTTGGTGTTACAACCTGTCGAATCGCCTGTAATC
ACTCCAGAGCGATGAAACGTTTCCGTTGCTCATGTAAACGGTGTAACCAG
GTGTGACCCCTTATTCCA
UFO11201.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32457-RC | 555 | CG32457-RC | 28..450 | 9..431 | 2115 | 100 | Plus |
| CG32457-RB | 621 | CG32457-RB | 218..516 | 133..431 | 1495 | 100 | Plus |
| CG32457-RB | 621 | CG32457-RB | 28..151 | 9..132 | 620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:29:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22987859..22988157 | 133..431 | 1495 | 100 | Plus |
| 3L | 28110227 | 3L | 22987669..22987792 | 9..132 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:30:00 has no hits.
UFO11201.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:06 Download gff for
UFO11201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32457-RC | 25..454 | 3..435 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:39 Download gff for
UFO11201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32457-RC | 25..454 | 3..435 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:38 Download gff for
UFO11201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32457-RC | 25..454 | 3..435 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:38 Download gff for
UFO11201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22987666..22987792 | 3..132 | 97 | -> | Plus |
| 3L | 22987859..22988157 | 133..431 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:39 Download gff for
UFO11201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22980766..22980892 | 3..132 | 97 | -> | Plus |
| arm_3L | 22980959..22981257 | 133..431 | 100 | == | Plus |
