UFO11202.5prime Sequence
1160 bp (1027 high quality bases) assembled on 2012-04-16
> UFO11202.5prime
CAGTCGACATGCAGCTTACCCGCCTTTTACTGAAGCCTCGAGCCTCGGAA
GTATTGACCGCATATTTGAAACAATGCCATGAGCCACCTTGGACATCATA
TTTCGTGAAGTTTCACGATGTGGCCAACGATCAGAGGGGAATGTCTCACT
TTAATTGGACCCTGGAAAACGGAACCAACTATCACATTCTTCGCACCGCC
TGTTATCCCTATATGAAGTACCACTGTAGCAAGAGGGAGGTGCAGGATCT
TTGGCTGGAGGACAAGTTCTTTCGCTTCCTTAAGGTGATTAATTTGGGCT
TACCAATGCTCTTCTATGGACTGGCTGCCATCCGTCTAATTAGTCACACC
GAGATCGTTCATGTCAGCGAGACGGTAAAAGTTCCCATATACTTTCTATA
TCCTGAGGACAAGGGCTCAAGCTTTGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAAACATATT
TCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCCCCGTAACCACGC
CACATCTTGCGAATATATGTGTAGAAAACTGCCGGAAAATCGTCGTGGTA
TTCACTCCAGAGCGATGAAAAACGTTTCATTTGCCTCATGAAACGGTGTA
CAAAGGGTGAACACCTATCCCATATCACAGCTCACGTCTTTCATGCATAC
GAATCCGATGACCATCATCAGGCGGCAGATGTATTATGCGATAACTGGGC
TAATTTCCCT
UFO11202.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34148-RB | 595 | CG34148-RB | 99..515 | 9..425 | 2085 | 100 | Plus |
CG34148-RC | 587 | CG34148-RC | 99..507 | 9..425 | 1820 | 95.7 | Plus |
P5CDh2-RD | 2291 | CG33092-RD | 197..476 | 298..20 | 960 | 90.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21878232..21878421 | 298..109 | 950 | 100 | Minus |
3R | 32079331 | 3R | 21877950..21878078 | 425..297 | 645 | 100 | Minus |
3R | 32079331 | 3R | 21878487..21878588 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:30:04 has no hits.
UFO11202.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:07 Download gff for
UFO11202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34148-RB | 99..515 | 9..425 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:41 Download gff for
UFO11202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34148-RB | 99..515 | 9..425 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:40 Download gff for
UFO11202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34148-RB | 99..515 | 9..425 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:40 Download gff for
UFO11202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21877950..21878077 | 298..425 | 100 | <- | Minus |
3R | 21878233..21878419 | 111..297 | 100 | <- | Minus |
3R | 21878487..21878588 | 9..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:41 Download gff for
UFO11202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17703672..17703799 | 298..425 | 100 | <- | Minus |
arm_3R | 17703955..17704141 | 111..297 | 100 | <- | Minus |
arm_3R | 17704209..17704310 | 9..110 | 100 | | Minus |