UFO11205.5prime Sequence
754 bp (754 high quality bases) assembled on 2012-04-16
> UFO11205.5prime
CAGTCGACATGGCGATGCGACACTTGACAGCTGCCACAATGGGCGTATTG
CTGCCAGTGGGCGTGCTGGGATTTGTGGTGCTGATGCAATTGATGGCATC
GGTGCGTGGACATGGTCGACTAATGGATCCACCGGCCAGGAATGCCATGT
GGCGTTTTGGCTATCCCAATCCGGTGAACTACAATGACAATGAGCTCTTC
TGCGGCGGCTATGCGGTGCAATGGGAGCAAAATAAGGGACGTTGCGGTAT
CTGCGGCGATGCCTACCACGTCAAATCGCCCAGGCCGCACGAGGCTGGTG
GTCAATACGCCAAGGGCATCATCTCACGCTACTATACCGCCGGTCAGACG
ATCGATGTTGAGGTGGAACTGACTGCCAATCATTATGGCCGTTTCGAGAT
GTTCCTCTGTCCGAACAACAATCCGCGACAGGAGGCGACACAGCAGTGCT
TCGATCGTTATCCGTTGCTCATTTCGGGCAGTCGAGAGCATCGGTATCTG
ATACCGCGTGATGCGAAAAAGAAGGATATATTCCGATACAAGGTACGTTT
GCCGCCATATGTCACCTGCACACAGTGCGTACTCCAATGGACCTACTATA
CGGCCAATATGTGGGGCACCTGTGCCAATGGCACCGAAGCCGTTGGCTGC
GGCAAGGCAGAGACATTCCGCAATTGTGCGGATGTGGCGATCGTTTCGAA
TACCGGCGGCGGTATTCCACCGCCTTTCGTGAATAACAAATCGCCATACC
CTGC
UFO11205.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42749-RC | 1412 | CG42749-RC | 280..1022 | 8..750 | 3715 | 100 | Plus |
| CG42749-RB | 1407 | CG42749-RB | 280..1022 | 8..750 | 3715 | 100 | Plus |
| CG42749-RD | 1488 | CG42749-RD | 356..1098 | 8..750 | 3715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5301464..5302059 | 65..660 | 2980 | 100 | Plus |
| X | 23542271 | X | 5302118..5302210 | 658..750 | 465 | 100 | Plus |
| X | 23542271 | X | 5301347..5301404 | 8..65 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:30:12 has no hits.
UFO11205.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:09 Download gff for
UFO11205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42749-RC | 244..997 | 1..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:46 Download gff for
UFO11205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42749-RD | 348..1101 | 1..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:44 Download gff for
UFO11205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42749-RD | 348..1101 | 1..754 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:44 Download gff for
UFO11205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5301339..5301404 | 1..65 | 95 | -> | Plus |
| X | 5301465..5302059 | 66..660 | 100 | -> | Plus |
| X | 5302121..5302213 | 661..754 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:46 Download gff for
UFO11205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5195372..5195437 | 1..65 | 95 | -> | Plus |
| arm_X | 5195498..5196092 | 66..660 | 100 | -> | Plus |
| arm_X | 5196154..5196246 | 661..754 | 98 | | Plus |
