UFO11213.5prime Sequence
1011 bp (997 high quality bases) assembled on 2012-04-16
> UFO11213.5prime
CAGTCGACATGAGGGAAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAAT
CAGATCGGTTCGAAGTTCTGGGAAATCATCTCCGACGAGCACGGCATCGA
TCCCAATGGTTACTACCACGGCGAGTCCGCCCTGCAGCACGAGCGGATCG
ATGTTTACTACAACGAGGCCAGCAGCGGGAAGTACGTGCCGCGAGCGGTG
CTCATCGACCTGGAGCCGGGCACCATGGACTCCGTCCGCCAGTCGCCGGT
GGGCCAGCTTTTCCGGCCAGATAACTTCGTTTACGGACAGTCGGGAGCCG
GCAACAACTGGGCCAAGGGCCATTACACAGAGGGCGCCGAGCTGATCGAT
TCCGTGCTGGAGGTGCTGCGCAAGGAATCCGAGGGCTGCGACTGCCTGCA
GGGCTTCCAGCTGGCTCACTCGCTTGGCGGAGGCACTGGCTCCGGCCTGG
GCACGCTGCTCATCTCGAAGATTCGCGAGGAGTACCCCGACCGCATCATG
AACTCCTTCTCCGTGGTGCCATCGCCCAAGGTATCCGACACTGTCGTGGA
GCCGTACAATGCCACGCTGTCCATCCACCAGCTGGTGGAGAACACCGACG
AGACATTCTGCATTGACAACGAGGCTCTCTACGACATCTGCTTCCGCACG
CTGAAGCTATCGTCGCCCACCTACGGCGATCTGAACCATCTCGTCTCCGT
CACAATGTCCGGAGTGACCACCTGCCTGCGCTTCCCTGGCCAGCTGAACG
CTGATCTTCGCAAGCTGGCGGTGAACATGGTGCCCTTCCCGCGTCTGCAC
TTCTTCATGCCCGGATTCGCTCCGCTGACCGCCAAGGGATCCCAGCAATA
TCGCGCCCTCACGTTGGCCGAGCTGACCCAGCAAATGTTCGATGCCAAAA
ACATGATGACCGCCTGTGATCCCCGGCAACGAACGCTACCTCACGTGCCT
GCATCTTCGGGGACCCATGTCCATGAAAGGAGGTGGAACCCCAATGTACA
ACGTGCAAAGC
UFO11213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub97EF-RB | 1701 | CG4869-RB | 226..1234 | 5..1011 | 4800 | 98.7 | Plus |
| betaTub97EF-RC | 1701 | CG4869-RC | 226..1234 | 5..1011 | 4110 | 94.5 | Plus |
| betaTub56D-RB | 1596 | CG9277-RB | 112..1088 | 9..984 | 2190 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19447896..19448748 | 916..64 | 2030 | 82.5 | Minus |
| 2R | 25286936 | 2R | 24311192..24311736 | 400..945 | 1525 | 85.7 | Plus |
| 3R | 32079331 | 3R | 9409080..9409603 | 922..399 | 1480 | 85.5 | Minus |
| 3R | 32079331 | 3R | 27974107..27974344 | 301..64 | 1190 | 100 | Minus |
| 3R | 32079331 | 3R | 27972918..27973151 | 533..300 | 1170 | 100 | Minus |
| 3R | 32079331 | 3R | 27968947..27969191 | 944..699 | 1150 | 98.8 | Minus |
| 3R | 32079331 | 3R | 27969658..27969829 | 700..529 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 9409659..9410046 | 402..15 | 440 | 74.2 | Minus |
| 2R | 25286936 | 2R | 24310997..24311138 | 261..402 | 395 | 85.2 | Plus |
| 3R | 32079331 | 3R | 27988099..27988159 | 65..5 | 290 | 98.4 | Minus |
| 3R | 32079331 | 3R | 27969439..27969535 | 642..546 | 215 | 81.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:30:25 has no hits.
UFO11213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:11 Download gff for
UFO11213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub97EF-RB | 203..1217 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:52 Download gff for
UFO11213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub97EF-RB | 220..1234 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:50 Download gff for
UFO11213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub97EF-RB | 220..1234 | 1..1011 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 03:31:50 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 21:18:52 has no hits.
