UFO11216.5prime Sequence
788 bp (788 high quality bases) assembled on 2012-04-16
> UFO11216.5prime
CAGTCGACATGATGAACTTCTCCGCGTTCGGCGGCCCCTTCTCCGGCATC
CACCAATTTGCCGCTAAATTCGACGCCCAGACGCCGGGCGCCTTCGGCAC
GCCCCCCGCGGCTGCCGCGAATGCAGCAGCCGCAGCGGCAGCGGCCGGCA
CCGATAACCATGTGCAGCGATATCAGACCAATGGCAATCACTTTAATCAG
AATGTGCCCAACGTTTCGGCTGCCAACAACATGCAATATGGCCAGAATAT
CTCCATACCGTACTCACAGCCGCAGGGTGATCTAAACTTTCTCAATGCAG
CCGCTGCGGCCGATCATAAGGTCCTCAACCAGCAGATCCTGCAGAATGTC
AACCAATCCTGGCAGACGTTGGCAAATACGGCCAACACGGTGGACTACTC
GTCACACCTGCTCTCCGCCACACTGCCCATCTCCATACAGCACTTCCTCA
AGTACTCGGAGACGATCAAGAAGGAGTCCACCGGCGATGTCCTGAAGAAC
GGCACCAATTTGGCCAGCCTGGCGCTGGGGGGCGTGGCCCTAACGCCCAG
CAACAACGGTGCGAATGGCGGCCACCACAACGGACTGGTGGGCATGGACC
ATGGCGGTCACATGACCAACATGACGGACGCCAACGGAGCGGCGCTGACG
AACGGAGCTAGCAACGGAGTGAATGGCAATGCTAACGGCACTGTGACCAA
TGGTGGCGCCCGCGCCCTCTCGAGCTCCGGATCTGTGGGCACACAAACTC
CAGCGGGGGACAGGCACTGCCCGCTGCAAGAAAGACCA
UFO11216.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)neo38-RD | 4963 | CG6930-RD | 1212..1995 | 6..788 | 3745 | 98.7 | Plus |
| l(3)neo38-RJ | 3691 | CG6930-RJ | 148..723 | 214..788 | 2705 | 98.3 | Plus |
| l(3)neo38-RG | 3815 | CG6930-RG | 272..847 | 214..788 | 2705 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11769641..11770104 | 782..321 | 2115 | 98.1 | Minus |
| 3R | 32079331 | 3R | 11777474..11777681 | 213..6 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 11771193..11771301 | 321..213 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:30:38 has no hits.
UFO11216.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:13 Download gff for
UFO11216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RD | 1185..1966 | 1..782 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:00 Download gff for
UFO11216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RD | 1209..1990 | 1..782 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:54 Download gff for
UFO11216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RD | 1209..1990 | 1..782 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:54 Download gff for
UFO11216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11777474..11777683 | 1..213 | 98 | | Minus |
| 3R | 11769648..11770103 | 322..773 | 98 | <- | Minus |
| 3R | 11771193..11771300 | 214..321 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:00 Download gff for
UFO11216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7603196..7603405 | 1..213 | 98 | | Minus |
| arm_3R | 7595370..7595825 | 322..773 | 98 | <- | Minus |
| arm_3R | 7596915..7597022 | 214..321 | 100 | <- | Minus |
