UFO11217.5prime Sequence
1083 bp (919 high quality bases) assembled on 2012-04-16
> UFO11217.5prime
CAGTCGACATGAGTTTGGTGTGGACTTTGATCGCCGGATTTCTCTATGCG
GAAATCGCACTGGTCCTTCTGCTGGTGCTGCCGGTGCTCACTCCTTACCG
CTGGAACCGGTTCTTCAAGTCCAAATTCCTATCGATGTTGGGACAACAGG
CGCACATATATTTCCTGCTGATCATGGGAATTCTGGTCATTTTCCTCCTG
GAGGCCATTCGCGAGATGCGCAAGTACTCCGGCTTGCAGCAGTCTAACGA
GGTCCACTTGAACGTGGAGATGCAGCACAGCATGAAGCTGTTCCGTGCCC
AGCGGAACTTCTACATCTCTGGATTCGCCATTTTCCTTGCCCTGGTCATC
CGGCGACTGGTAAACTTGATCTGCACCCAGGCCAATCTCATGGCCCAGAG
CGAGGCTTCCTTCAAGCAGGCACAGAGCGCCACTGCAGCCGCACGTTCCT
TGCTGGAGAACAAGAACACCGAGAAGGCCAAGGAAGCCGGCGAGGATACC
ACTCTCATCGAGCTGTCAAGACTGCGGAGACGTGTGCAAGGACTCACCGC
CCGAGTGTCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAATCCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCCAGCGAGCTCGATATCAAATTACG
CCCCCGCCCTGCCACTCATCGCATACTGTTGTAATTCATTAAGCATTCTG
CCGAAATGGAAGCCATCACAAACCGGCATGATGAACCTGATCGCCAGCCG
CATCACCACCTTTGTCGCCTTGCCTAAATATTTGCCCATGGTGAAATCGG
GGGCGAAAAATTCTCCATATGGCCCCGTTTATCCAACCTGGTGAACCTCC
TCAAGGATGGCCTAAACCAAAACCTTTTTCTTCATAGACCCTTTAGGGAA
TCGTGCCGGGTTTTCCCGTAACCCGCCACTTCT
UFO11217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13887-RD | 1306 | CG13887-RD | 158..709 | 9..560 | 2760 | 100 | Plus |
| CG13887-RE | 1446 | CG13887-RE | 261..766 | 9..514 | 2530 | 100 | Plus |
| CG13887-RB | 1262 | CG13887-RB | 261..766 | 9..514 | 2530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 838121..838624 | 9..512 | 2520 | 100 | Plus |
| 3L | 28110227 | 3L | 839101..839150 | 511..560 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:30:42 has no hits.
UFO11217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:14 Download gff for
UFO11217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13887-RD | 154..721 | 1..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:02 Download gff for
UFO11217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13887-RD | 150..717 | 1..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:57 Download gff for
UFO11217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13887-RD | 150..717 | 1..570 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:57 Download gff for
UFO11217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 838113..838624 | 1..512 | 99 | -> | Plus |
| 3L | 839103..839158 | 513..570 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:02 Download gff for
UFO11217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 838113..838624 | 1..512 | 99 | -> | Plus |
| arm_3L | 839103..839158 | 513..570 | 93 | == | Plus |
