UFO11219.5prime Sequence
783 bp (781 high quality bases) assembled on 2012-04-16
> UFO11219.5prime
CAGTCGACATGGATTGTCCTATGCTCCTATCTCGTTACAGGCGCTATGAG
GAGGATCCAGATAATGCCTGGAATTGCTGCTCCTGGTGCGAATACTTGCT
GATCGTCATCCTGTCCACGATCCTGCTGGTGGGCGTGCTGGTGCTAACCC
TCTTCTGGGTGATGTTCTACCGCGATGGCTTCGCCTGGTCGGAGAGTCCC
AAGCAGCAGTTCAATCTGCATCCCATCCTCATGATTGCTGGCTTCGTCAC
GCTCTCCGGATTTTCCATCTTGATCTATCGTCTGTGCCGCTGCGTGAAGC
AAATCTATGTGAAGCTGATCCACATGTTCTTCCACGCCGTGGCCATTCCG
TGCATCGCCCTGGGTTTCATATCCGTCTTCGCTTCCCACGACGCGTTGCA
TAAGGTCAACTTCTATAGCCTCCACTCGTGGCTGGGCTTCGTGACAATGG
GCATGTTCGTGCTCCAGTTTGTGATCGGCTTCTTCAGCTTTCTGGTAATG
CTGTGCTGTGAGAACAAGACCTACAGCTGCCGCTCGGCCATGGTGCCCAT
CCACGCCAGCTTGGGACTGGCCAACTTCTGGCTGGCCATTGCCACATCCG
TCACGGGACTGATCGAGAAGGAGCGCGAAACCGTCAACGAGGCGGGCGTG
AGCAGTGAGAACAAGCTGGTGGAGCACTACATCACCAGTGCCATCGGCGT
GACCCTGATCTTTCATTGGCATCATTCGTCACCTTCGCGGTGCGGCGTTC
CAATGCGCCCGCTTCGGCGAGGTCTACGTCACG
UFO11219.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nemy-RB | 1804 | CG8776-RB | 304..1045 | 41..783 | 3630 | 99.5 | Plus |
| nemy-RC | 1601 | CG8776-RC | 101..842 | 41..783 | 3630 | 99.5 | Plus |
| nemy-RA | 1994 | CG8776-RA | 494..1235 | 41..783 | 3630 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12660973..12661229 | 264..8 | 1285 | 100 | Minus |
| 2R | 25286936 | 2R | 12660678..12660900 | 487..265 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 12660457..12660630 | 652..479 | 855 | 99.4 | Minus |
| 2R | 25286936 | 2R | 12660256..12660387 | 783..651 | 505 | 97 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:30:46 has no hits.
UFO11219.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:14 Download gff for
UFO11219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RF | 522..1296 | 8..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:04 Download gff for
UFO11219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RA | 492..1233 | 41..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:58 Download gff for
UFO11219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RA | 494..1235 | 41..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:58 Download gff for
UFO11219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12660256..12660385 | 653..783 | 96 | <- | Minus |
| 2R | 12660457..12660621 | 488..652 | 100 | <- | Minus |
| 2R | 12660678..12660900 | 265..487 | 100 | <- | Minus |
| 2R | 12660973..12661229 | 8..264 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:04 Download gff for
UFO11219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8547761..8547890 | 653..783 | 96 | <- | Minus |
| arm_2R | 8547962..8548126 | 488..652 | 100 | <- | Minus |
| arm_2R | 8548183..8548405 | 265..487 | 100 | <- | Minus |
| arm_2R | 8548478..8548734 | 8..264 | 100 | | Minus |
