UFO11220.5prime Sequence
934 bp (859 high quality bases) assembled on 2012-04-16
> UFO11220.5prime
CAGTCGACATGGCGATGCAGAAGTTCTTCAGCGTGCTGCTGCCGGATGTG
AAGCGGGAGCTGCGCCGCGGGATCATCGAGTGCTCCAAGCGGGGCCTCCT
GCACAGCACCAAGTGGCTGGCGGAAATGCATCACGGACTGGCCGATGTGC
ACATAGACAATGAGGCGCCTGATGAGGATCGCACATTCAGCGAGTGTCAG
CTGGAGGGGATTGCGCCGGAGGAGTACAGCGACTACTTCCTGGCCAAGAG
CTACTACGACGTGAGGGAGTACGACAGGGCGGCGCATGCGGTCAGGAACT
GCGAGTCCAGTGTTCCGCGCTTCCTGCACTTCTATTCCAGCTACATGGCC
AGGGAAAAGCGGCGACTGGACTCGACCACGGACCAGGCGAATCTGCACGA
ACCGAATCAGATGCGCGATCTCGCCGACCTGCTGGCTACGTTGCGCATGG
AATACGGCAAAAGTCGGCTCGATGGCTACGGAATATACTTATACGGAGTA
GTCCTGAAAGCACTGAATCTCAACCAGGCCGCCGAGCAAATGCTGGTCCA
GGCCATCAGACTGGTACCCATGCTGTGGAGCGCCTATCTGGAGCTCTCGC
CCCTCATCATGGAGAAGAAGAACTGCTGAGCCTGCAGCTGGGTGGTCACT
GGATGCGGCACTTCTTCATGGCGCACACTTACCTGGAGCTGTACCTCAAC
GACGACGGCCTGAAGATCTACGAGGACCTGCAGGCATCGGGTTTCAGCAA
GAGCATCTACTTGATTGCCCAAATGGCTCTGGCCTATCACAATAAGCGGG
ATGTGGACAAGGTGATTGAGTTGTACTAGGCGCTTCTCGAGAGCGCTTCC
TCCCTACCGCCGGGACATGTGGAACACCTATTCCATTCTGCTGTTTGTAA
GGATATGAAAACCCAAATGGATCAATTGGCCCCC
UFO11220.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31687-RB | 3653 | CG31687-RB | 77..1001 | 9..932 | 4315 | 98.1 | Plus |
| CG31687-RC | 6696 | CG31687-RC | 77..1001 | 9..932 | 4315 | 98.1 | Plus |
| Cdc23-RB | 2184 | CG2508-RB | 77..998 | 9..932 | 4255 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20450301..20451225 | 9..932 | 4210 | 97.7 | Plus |
| 2L | 23513712 | 2L | 20459418..20460339 | 9..932 | 4150 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:30:49 has no hits.
UFO11220.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:15 Download gff for
UFO11220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31687-RB | 95..1009 | 9..924 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:06 Download gff for
UFO11220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31687-RC | 77..991 | 9..924 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:00 Download gff for
UFO11220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31687-RC | 77..991 | 9..924 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:00 Download gff for
UFO11220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20450301..20451215 | 9..924 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:06 Download gff for
UFO11220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20450301..20451215 | 9..924 | 98 | | Plus |
