UFO11221.5prime Sequence
1086 bp (969 high quality bases) assembled on 2012-04-16
> UFO11221.5prime
CAGTCGACATGGTAAAAAATGGGCAATCGAAACGGCAGCCATGGGTGAAG
AACCTGTACTCCAACCGGGAATATCCGGACAACTACACGGATGCCAGCTT
TCTGAAGGATCTGCGCACGAATCTACATTGTAGAATATACACGTTCGGCG
AAGCAATTGCCGGTATTACAGTGCTTAATAATCAGATCTCCTGCATCACC
GGCTTCCTAATACTCTACCAACTTATGCTCAGCGACAGCGTGTCGCCCAC
CACGATCCTGGTACCCAGTTGCGGGATCACAGGCATTGGATACCTGTGCT
ACCGAGGAAGGAGTCTCAGCTGGGCCCTGCTGGGCGAGGATTCCAAAACC
CTGGTCACAGTGGTCCTCTTCGGCTACTTATTCTCACCGATGCTGCACAC
CCTAACGCAGGCCATCAGCACGGACACCATATACACAATGACCTTCTTTG
TCCTTCTGGGCAACCTGATATTTGGACACTATGGATTGGATGTAGCCATG
GTCTCTAAGGCCGTCTCGTTGAATGCCGCCATATTTGGAGCAATTTGCTT
AGCCTCCCGCCTGCCGACTTCGTATCACGCCTTCGTGCTCCTTGTCGAGG
CTGCCGTCTTTTTCGTCCTTTATCCCATAATGACGGAAGCGAATTGGCAT
GCTGGATTCATGTTGCCTATATTTGCAATATGCTGTATGGCGCTGTACTG
TATATCGCGCCCGGTGCTCTATCTCTACGCCTCCACCACCATTTTCATCA
ACTTTGTCTGCCCGTTCATATTCGTGTGGCACCAGCAGTACAAGTTCAAC
ATTCACGGGCCCTGGGACGAGGCCATCGTGGAGGAAACACCGAGGAGATC
TGGATGGGAACTTAGCAAGCTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAGTGGTCATATTCATAATCATAATCTTAATCCATTATTCACACTAG
CCTAGGAATCCTGTTCATGACTAATGTTTGAATTCTCAACAATAAAAAAC
GCCCGGGCGTACCGAGCGTCTGAAACAAATTCGAAAGGAGTCTTGATGTC
TTTAATGGAATCATCAACAGTGATTCCAAACGGAAC
UFO11221.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-C-RB | 1103 | CG12077-RB | 41..898 | 9..864 | 4210 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3318691..3319192 | 510..9 | 2510 | 100 | Minus |
| 3L | 28110227 | 3L | 3318233..3318591 | 864..508 | 1665 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:30:53 has no hits.
UFO11221.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:16 Download gff for
UFO11221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12077-RB | 39..902 | 6..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:08 Download gff for
UFO11221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-C-RB | 39..902 | 6..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:01 Download gff for
UFO11221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-C-RB | 39..902 | 6..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:01 Download gff for
UFO11221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3318229..3318589 | 510..870 | 98 | <- | Minus |
| 3L | 3318692..3319194 | 6..509 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:08 Download gff for
UFO11221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3318229..3318589 | 510..870 | 98 | <- | Minus |
| arm_3L | 3318692..3319194 | 6..509 | 99 | | Minus |
