UFO11224.5prime Sequence
817 bp (817 high quality bases) assembled on 2012-04-16
> UFO11224.5prime
CAGTCGACATGAGGCTGACGAACACTCTCTGTGCCCAGCACATCGGCTGG
CATTTCAAGAAGCACTGGCTGGTCCAGGGTAGGCGAGTCCCCAAGGAAAC
TGGCGCCGCGGCGGAGCTCCTGAAGCTAGGTGTTCTGGTGAAGAATCCCG
AGGATCTCTTGAACGCCAAAGTTGAAAAAAAACTAGTGGACATTGTTGGC
GCACGCGAAAAACCCGTTCCCGAGGACAGCAGGCACCCTGACTGGCACCC
CACAGTTTGCAACACTTACTCCGACAACAGCGTGCTAATTGGTGGATTGC
CGCAGGCCCAGGTGCTGACCAACTCCATTGTGATCCAAACATTTCCCAAG
CACATCGAGGATGCCATTGCAAGTCAGCAGTTGCCAAATTCCGTAGACAA
GAGTGTCCGGCATGCGATTCTGGCATCCCACGTGCTTGATGCAGAGCAAG
TCAAGCTGCCCAAGGTGAGGCTACCGGAGAGGCCGGCCTTTAACCTGCCC
CGCTCCTACGGAATATCACACGAAAGGGTCAACCGACTGTTGGTAAACAA
ACTCCTGCATGAAAGTGAAAAACTGGCTGGCCGTTCAGTCTCTGTTCGAA
GGAAGCTGATAGACAACGCGTCTTTTAAGACTTTTTTAAGCAAAGACGGG
GATCTGCTAGGATTCTCAATCAATGCTGAAAAAGTGGTATTTGCCAACCG
AGCCATCGAAGGTGTTAAGGGAAAATTTCGAAAGAGATCTGCCTGATCTT
TACCCCATGAAAGAGTACTATATCGATTCCGAAGTACCACATTTACCAAA
GCTAAATACTTGTATCC
UFO11224.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL37-RB | 1356 | CG42632-RB | 84..889 | 9..817 | 3925 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10783424..10783771 | 532..185 | 1740 | 100 | Minus |
| 3R | 32079331 | 3R | 10783086..10783370 | 816..529 | 1230 | 97.6 | Minus |
| 3R | 32079331 | 3R | 10783834..10784009 | 184..9 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:30:21 has no hits.
UFO11224.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:10 Download gff for
UFO11224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL37-RB | 64..869 | 9..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:50 Download gff for
UFO11224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL37-RB | 84..889 | 9..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:48 Download gff for
UFO11224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL37-RB | 84..889 | 9..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:48 Download gff for
UFO11224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10783085..10783366 | 533..817 | 97 | <- | Minus |
| 3R | 10783424..10783771 | 185..532 | 100 | <- | Minus |
| 3R | 10783834..10784009 | 9..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:50 Download gff for
UFO11224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6609556..6609731 | 9..184 | 100 | | Minus |
| arm_3R | 6608807..6609088 | 533..817 | 97 | <- | Minus |
| arm_3R | 6609146..6609493 | 185..532 | 100 | <- | Minus |
