UFO11225.5prime Sequence
984 bp (958 high quality bases) assembled on 2012-04-16
> UFO11225.5prime
CAGTCGACATGTTGAACTCCCTTCCTTGCTCACTTCTTGATCACCCCAAG
CTAAAATACGTGTTCCTAAAGCGGGTTAAGCCAAAGAAGCACCATGAAAT
CATTCGAATGGCCGAAATCTGTGCCCTGAGTCAACAAAAAACTCCTGTGG
ACTTTATTGTCGACTTTGGGGCTGGTGTCGGTCACCTAGCACGTGTTTTG
GGCTACGGGTATGGACTACGAGTGTGCTGCTATGAGATGCAACCCGATCT
CAATCAGCAAGCAAGGGAAATTGATTTAAAGCTGGAGTCCATGGCAGCAA
AACACCTATCAGAGGATGAAACCACACACTTTCAGCGACCAGTACACCTT
ACACATCGCTTGGAGAGCAGCACTAAGCCAGAGCAGTTCCTATCCAGCAT
TCGGCAGGCCCTGCAGCTAACAGACGACAATTTCCGATTTGGTGTGATAG
GCCTGCATCCCTGTGGCAATCTGGGCCCGACACTGATGCGCATGTTTCTC
GGCTGCCCGCAGGCCAAGTTCCTCAATTTTGTGGGCTGTTGCTACCAGAA
GATGACTACCCAGTCCACCCATCCCAGGGAGCATGTCCATGGGTACCCGT
TGAGCAGTGAACTCAAAGATAAAAACGAATGCCAACTCAGCTACGAGGCC
CGTGAGATCTCCTGTCACGCTATGGAGGTGTATCACGATCGTCTGAGGAT
GGGGGATTACCAACATCTCCGCATACACTCCCTAAGAGCCGCCGCCGAGC
GAATAATAGTGCATCAGTTTCCCAGAGCTTCGCCACTGTGCCCTGCGAAA
TGTAAAAGTACTCACCCGGCATGACGTTTCACCAATATTTCCAGAAAGCC
GTACAGGGGTACTCGCTTTTGAAGCACCTGGACAGCCGAACTCTAAGTTA
ACCAGCAGACGGAATCAGATTTGGGCCAACTGTCACCGGATAGTCTCATC
CTACCAACTCCAATTATGATGGGCTCCGCTTGTG
UFO11225.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2906-RE | 1591 | CG2906-RE | 340..1308 | 9..984 | 4525 | 98.2 | Plus |
| CG2906-RD | 1587 | CG2906-RD | 342..1304 | 15..984 | 4495 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7956897..7957715 | 14..834 | 4005 | 99.8 | Plus |
| 2R | 25286936 | 2R | 7957769..7957883 | 835..954 | 290 | 92.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:31:09 has no hits.
UFO11225.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:19 Download gff for
UFO11225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2906-RE | 340..1290 | 9..966 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:16 Download gff for
UFO11225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2906-RE | 340..1290 | 9..966 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:07 Download gff for
UFO11225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2906-RE | 340..1290 | 9..966 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:07 Download gff for
UFO11225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7956890..7957715 | 4..834 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:16 Download gff for
UFO11225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3844395..3845220 | 4..834 | 99 | -> | Plus |
