Clone UFO11226 Report

Search the DGRC for UFO11226

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:112
Well:26
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG40341-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11226.5prime Sequence

944 bp (943 high quality bases) assembled on 2012-04-16

> UFO11226.5prime
CAGTCGACATGACGACGCCGGCGACAACAGACAAGAACAACGACAACAAC
ACCAGTAGCAACACCAACAACAACAGCAGCAACAAGAAGTCCAACGAAAG
CCGGCAACAACAACGTGACATGGCCAGGACAACAACAATGGCAGCCGGAA
AAGCGTCGGGAAAAATGAGGGAGGAAAATATATGGCATACACTTAGGCGC
GCCAAGTCGCTTACTGACTTTTTGCCTATCTCGCCCGCCCGATTTCCCCC
ATTTTCCGCCTTTCCCCCCCATCCACCCCTCGGTGCACCACACTGGAGCG
ATACAGTGTGTGCATTGGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAACGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAAACT
GGTGAAACTCACCCAGGGATTGGGCTGAGACGAAAAACATATTCTCAATA
AACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTACACGCCACTCCTGCG
AATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATCACTCCGAGCGAT
GAAACCGTTTCAGTTTGCTCTGGAAACGTAGAACAAGGGTGACA

UFO11226.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 02:31:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20248223..20248423 9..209 1005 100 Plus
2L 23513712 2L 20248503..20248614 209..320 560 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:31:13 has no hits.

UFO11226.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:19 Download gff for UFO11226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40341-RB 1..315 9..321 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:18 Download gff for UFO11226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40341-RB 177..496 1..320 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:08 Download gff for UFO11226.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20248215..20248423 1..209 98 -> Plus
2L 20248504..20248614 210..320 100 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:08 Download gff for UFO11226.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20248215..20248423 1..209 98 -> Plus
2L 20248504..20248614 210..320 100 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:18 Download gff for UFO11226.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20248215..20248423 1..209 98 -> Plus
arm_2L 20248504..20248614 210..320 100 == Plus