UFO11227.5prime Sequence
777 bp (776 high quality bases) assembled on 2012-04-16
> UFO11227.5prime
CAGTCGACATGGGCGAGCGGGATCAGCCACAGAGCTCAGAGCGGATCTCA
ATATTTAATCCGCCAGTATACACGCAGCACCAGGTGCGCAATGAAGCCCC
CTACATACCCACCACATTTGACCTCCTCTCAGACGATGAGGAGTCGTCAC
AGAGAGTTGCCAACGCCGGGCCATCTTTCAGGCCCTTGACTTACTCGGAT
GCTGTGCGTCTAAGCCAGAATGGCTTCGCCAACTCCCGCGTAAGTGGGCA
CTCCAGCTATACGGTGCGCAGACCACCGGCACTAGTTGACAGAAGCATTC
TATCCCAGGAAATGGAGCGCATGGACCAAGAGCAGTATATCTACCTTATC
CGTACCGCAGCCCAAAGTAATTCCGTGGGCAGTCACTACGCCGAACCGGT
TACTGATAACTCGGAGGTCAAGAAAGTCAGTGAAACCAACAAAAGTGACG
CACCACAGCCGTTAACCCCTCAACCTACCAGACTCACCAGAACAGAATCC
TTGCACCGTCGTTTTGCCAGCTGCGTCAACTTAAATGATGACTTCGCCGA
GCAATTTAAAGCAAGAGCGGCGGACTGTGAAGAGAAATCCAAACATCGTC
TTAGATTAGCTGAAGAGCAGAGGCTTTTTTCGAATTTCAGTGCTATAAAG
AACATAGATGAACTCCGTGCCTATGAACGAAAAGTAGTGGAAAACATATT
CCAGTCTTGTATCGCCCACAAGCCCATTTTTGTACTCGGGCCCTTGGACA
AGCCAAATGTGAAGAAAGTGACCAAGC
UFO11227.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11023-RC | 1802 | CG11023-RC | 151..920 | 8..777 | 3850 | 100 | Plus |
| CG11023-RB | 1880 | CG11023-RB | 151..920 | 8..777 | 3850 | 100 | Plus |
| CG11023-RD | 1844 | CG11023-RD | 151..588 | 8..445 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7679..8116 | 8..445 | 2190 | 100 | Plus |
| 2L | 23513712 | 2L | 8191..8524 | 444..777 | 1670 | 100 | Plus |
| X | 23542271 | X | 19204495..19204830 | 356..9 | 760 | 81.9 | Minus |
| X | 23542271 | X | 19203631..19203789 | 777..619 | 195 | 74.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:31:17 has no hits.
UFO11227.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:20 Download gff for
UFO11227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11023-RC | 146..920 | 1..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:21 Download gff for
UFO11227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11023-RB | 146..920 | 1..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:08 Download gff for
UFO11227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11023-RB | 146..920 | 1..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:08 Download gff for
UFO11227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7674..8116 | 1..445 | 99 | -> | Plus |
| 2L | 8193..8524 | 446..777 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:21 Download gff for
UFO11227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7674..8116 | 1..445 | 99 | -> | Plus |
| arm_2L | 8193..8524 | 446..777 | 100 | | Plus |
