UFO11228.5prime Sequence
1019 bp (985 high quality bases) assembled on 2012-04-16
> UFO11228.5prime
CAGTCGACATGAGTATGTCGCGCGGCGGCAACACAACTCTGGACTTGCAG
CCGCTCCTGGCGGAGAGCGATGTCGGAAACAGGGAGCTGGAGGAGAAGAT
GGGCGGATCGGCGGATCGGTCATCGCTGCTCGATGGATCCGGTTCGAAGG
AGCTGAGTCACCGGGAACGCGAGGACTCGGCGTTGTTCGTCAAGAAGATC
GGGAGCGCCTTGTTCTATGGCTTGTCCTCCTTCATGATTACGGTGGTAAA
CAAGACGGTGCTTACCTCCTACCACTTCCCCTCGTTCCTGTTCCTCAGCC
TCGGGCAACTTACTGCTAGCATTGTGGTCCTGGGCATGGGCAAGCGCCTG
AAATTGGTGAACTTTCCCCCTCTGCAGAGGAATACCTTCGCCAAGATCTT
TCCGCTGCCACTGATATTTCTGGGAAACATGATGTTTGGACTGGGTGGCA
CAAAAACCTTGAGTCTGCCCATGTTCGCAGCCCTACGACGCTTCTCTATC
CTGATGACCATGCTGCTGGAGCTCAAGATCCTGGGACTGCGACCTTCGAA
TGCGGTTCAGGTCAGCGTATACGCAATGATCGGTGGAGCGCTGCTGGCCG
CCTCTGATGATCTGTCCTTCAACATGAGGGGCTACATCTATGTGATGATC
ACTAACGCCTTGACCGCCTCGAATGGCGTATATGTGAAAGAAAAAAACTC
GACACCTCGGAGATCGGAAAGTACGGCCTAATGTACTACAACTCGCTGTT
TATGTTTCTGCCTGCCCTGGCCCTCAACTATGTTACAGGGAATCTAGATC
AGGCGCTGAACTTTGAACAATGGAATGACTCAGTGTTTGTGGTGCAGTTC
CTGCTCAATTGCGTTATGGGTTTCATCCTAATCGTCAGCACCATCCTGTG
CACGCAATTCAACTCGGCGCTGACACACCCATTGGTGGGATGCCTGGAAA
ACATCTGCGTAACATATTCTGGGCATGTTCATTGGAGGCAACTCGTCCTT
CCTCGTGGCCTCCAACTGT
UFO11228.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32174-RC | 3871 | CG32174-RC | 216..1212 | 9..1009 | 4695 | 98.5 | Plus |
| frc-RB | 3871 | CG3874-RB | 216..1212 | 9..1009 | 4695 | 98.5 | Plus |
| frc-RA | 1609 | CG3874-RA | 216..1212 | 9..1009 | 4695 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17431994..17432975 | 993..9 | 4570 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:31:21 has no hits.
UFO11228.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:21 Download gff for
UFO11228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32174-RC | 211..1209 | 9..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:22 Download gff for
UFO11228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frc-RA | 216..1214 | 9..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:11 Download gff for
UFO11228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frc-RA | 216..1214 | 9..1012 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:11 Download gff for
UFO11228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17431977..17432975 | 9..1012 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:22 Download gff for
UFO11228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17425077..17426075 | 9..1012 | 98 | | Minus |
