UFO11229.5prime Sequence
738 bp (738 high quality bases) assembled on 2012-04-16
> UFO11229.5prime
CAGTCGACATGTCGGGCGATGTGCAGCCGCGTAAGCGCAAGGATAAGCGC
CGAAAACGCGATGATCGCAAGTCCGAGGGCGATGTGACTGTTCTGCGTCA
GTCCAGTTTTCAAGATGACGACGAATCTTCGCACGGCGTTCACATTACAA
AGATGGGAAACGAAGATCTCCACCTGCATGTGCACCACGATCACGGAACT
GGCGGTCACTGGTGCGCCAAGATTATATTCTTCGCCCTGATGGCAGTGCT
CCTCGGTTTGGTGGGTCTGATCATCATGGAGAATCGCGGACTGGAGGATC
TGGACACTCCTCTGTCGGAGTCTAGGTTCTCGAAAGTTTTTGATGGCTGG
GTGGACGAACATCGAGATGAGCATGATGGTCACGATGTGCAGGAACCCTC
GGGAGAGGCGTTAGATGATCACGATGAACACGACGACCATGATGATCATG
AAGACGAAGACGAAGAGCCCCTCACAGAAGAGTTAGAAGAAGAACTGGAG
GAAGAGGAAGAGCCAACTGAGGAGGATGAGCCAGCGGCAGATGAAGAATA
TGAGGAGGATGAAGATGAGGAGAACAATGCGGGTGAAAACATAACTGCCG
AGGATGCGGAGGAGGAGGAAGAGGAGGAGGATAACGATGATGAAGGCACC
GTAGAGGCACTGTAGAAGCTACCACTGAAGCCACTACGGAAGCCACTGGC
GAATATGAAGCTGAGAAAGATGATGAGGACGAAGCAGC
UFO11229.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Asph-RJ | 3197 | CG8421-RJ | 119..849 | 9..738 | 3600 | 99.6 | Plus |
| Asph-RI | 3986 | CG8421-RI | 119..849 | 9..738 | 3600 | 99.6 | Plus |
| Asph-RH | 2783 | CG8421-RH | 119..849 | 9..738 | 3600 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16112194..16112475 | 458..738 | 1330 | 98.9 | Plus |
| 2R | 25286936 | 2R | 16111739..16111926 | 113..300 | 940 | 100 | Plus |
| 2R | 25286936 | 2R | 16111983..16112141 | 301..459 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 16111500..16111554 | 60..114 | 275 | 100 | Plus |
| 2R | 25286936 | 2R | 16110620..16110671 | 9..60 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:31:24 has no hits.
UFO11229.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:21 Download gff for
UFO11229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Asph-RJ | 128..866 | 1..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:24 Download gff for
UFO11229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Asph-RH | 111..849 | 1..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:12 Download gff for
UFO11229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Asph-RH | 111..849 | 1..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:12 Download gff for
UFO11229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16110612..16110671 | 1..60 | 93 | -> | Plus |
| 2R | 16111501..16111554 | 61..114 | 100 | -> | Plus |
| 2R | 16111741..16111926 | 115..300 | 100 | -> | Plus |
| 2R | 16111983..16112141 | 301..459 | 100 | -> | Plus |
| 2R | 16112196..16112475 | 460..738 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:24 Download gff for
UFO11229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11999701..11999980 | 460..738 | 98 | | Plus |
| arm_2R | 11998117..11998176 | 1..60 | 93 | -> | Plus |
| arm_2R | 11999006..11999059 | 61..114 | 100 | -> | Plus |
| arm_2R | 11999246..11999431 | 115..300 | 100 | -> | Plus |
| arm_2R | 11999488..11999646 | 301..459 | 100 | -> | Plus |
