UFO11230.5prime Sequence
821 bp (819 high quality bases) assembled on 2012-04-16
> UFO11230.5prime
CAGTCGACATGGGAGACGACAACCAGCGATTCCAATTCCAACTGCAGGCA
GTGGCAACAGTTTTCTTGTTGGTTTCACAGCTTTGCTTTGCCCTGCCCTT
TGCATCTTCCACCGGAAACGATATAGAAAACGATGGGAACATTCAGAATT
CGGCCAGTGGACGACCTGTGGATTATCACACGGTGGTGGGCCACTTCAAG
GACTTCTTCATGTACCTGCCGGTGATGATGACCACGCTGAAGGAGACGAT
GTCAGGATTCCCCAAGTTCGCCGAGGGCATGCGCATCCTGACTTCTGGCA
AAGGACGAGTGGACGGCGAGGATTGCAAGTGCAGCCAAAATGCATTGGCC
AGCGGCGAACTCTTGGACACCAATTCTCGCTTCGGTGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCCGACATGGAAAGCCATCACAAAC
GGCATGATGAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGT
ATAATATTTGCCCATTGCTGATAACGGGGGCGAAGAGTTGTCCATATTGG
TCCACGTTAAATCAAACTGTC
UFO11230.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14187-RA | 492 | CG14187-RA | 22..400 | 8..386 | 1895 | 100 | Plus |
| CG14187-RB | 438 | CG14187-RB | 86..346 | 126..386 | 1305 | 100 | Plus |
| CG14187-RB | 438 | CG14187-RB | 22..86 | 8..72 | 325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20112357..20112671 | 386..72 | 1575 | 100 | Minus |
| 3L | 28110227 | 3L | 20112762..20112826 | 72..8 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:31:28 has no hits.
UFO11230.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:22 Download gff for
UFO11230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14187-RA | 17..400 | 1..386 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:27 Download gff for
UFO11230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14187-RA | 17..400 | 1..386 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:13 Download gff for
UFO11230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14187-RA | 17..400 | 1..386 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:13 Download gff for
UFO11230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20112357..20112670 | 73..386 | 100 | <- | Minus |
| 3L | 20112762..20112829 | 1..72 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:27 Download gff for
UFO11230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20105457..20105770 | 73..386 | 100 | <- | Minus |
| arm_3L | 20105862..20105929 | 1..72 | 94 | | Minus |
