UFO11235.5prime Sequence
780 bp (780 high quality bases) assembled on 2012-04-16
> UFO11235.5prime
CAGTCGACATGTCTTTATTCGGAGCGTTGATGGGTGATTTCGACGACGAT
CTCGGCCTTATGAACAACCACATGAACCACACTATGAACGCGATGAACAT
GCAGATGCGCTCGATGAATCGCCTGATGAACAGCTTTATGCCCGATCCCT
TCATGCAGGTCTCGCCCTTTGACCAGGGATTCCAGCAGAACGCTCTCATG
GAGCGTCCGCAGATGCCGGCCATGCCAGCCATGGGCCTCTTCGGCATGCC
CATGATGCCAAACTTTAATCGCCTGTTGAACGCTGATATTGGTGGCAATT
CAGGCGCATCCTTCTGCCAGAGCACCGTGATGACCATGTCATCGGGTCCC
GATGGGCGTCCTCAGATCTACCAGGCCAGCACTAGTACCAAAACAGGACC
GGGAGGCGTTCGTGAGACCCGCAGGACGGTGCAGGACTCGCGCACTGGGG
TGAAGAAGATGGCCATTGGTCATCACATCGGCGAGCGGGCACACATTATT
GAGAAAGAGCAGGACATGCGCTCAGGACAACTGGAGGAGCGCCAGGAGTT
CATTAATCTGGAGGAGGGAGAAGCCCGAGCAGTTTGACAGGGAGTTTACA
TCGCGCGCTAGTCGCGGAGCGGTGCAGTCAAGACATCATGCTGGTGGCAT
GCAGGCCATCATGCCCGCCCGTCCAGCGGCACACACCTCGACGTTGACCA
TTGAGCCAGTGGAGGACGACGACGACGATGATGATGACTGTGTAATCCAG
GAGCAGCAACCGGTTCGCTCCTCCGGCGGG
UFO11235.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlf-RH | 1745 | CG8295-RH | 103..868 | 9..775 | 3810 | 99.9 | Plus |
| Mlf-RE | 2112 | CG8295-RE | 109..874 | 9..775 | 3810 | 99.9 | Plus |
| Mlf-RD | 1806 | CG8295-RD | 109..874 | 9..775 | 3810 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15938490..15938979 | 775..285 | 2405 | 99.8 | Minus |
| 2R | 25286936 | 2R | 15939037..15939257 | 285..65 | 1105 | 100 | Minus |
| 2R | 25286936 | 2R | 15939910..15939965 | 64..9 | 280 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:31:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 882..908 | 715..741 | 117 | 92.6 | Plus |
UFO11235.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:17 Download gff for
UFO11235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlf-RD | 109..878 | 9..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:12 Download gff for
UFO11235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlf-RD | 109..878 | 9..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:04 Download gff for
UFO11235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlf-RD | 109..878 | 9..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:04 Download gff for
UFO11235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15938486..15938978 | 286..780 | 99 | <- | Minus |
| 2R | 15939037..15939257 | 65..285 | 100 | <- | Minus |
| 2R | 15939910..15939965 | 9..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:12 Download gff for
UFO11235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11825991..11826483 | 286..780 | 99 | <- | Minus |
| arm_2R | 11826542..11826762 | 65..285 | 100 | <- | Minus |
| arm_2R | 11827415..11827470 | 9..64 | 100 | | Minus |
