UFO11236.5prime Sequence
353 bp (351 high quality bases) assembled on 2012-04-16
> UFO11236.5prime
CAGTCGACATGGCCCAACCACAGCTGCTGCAAATCAAATTGTCACGTTTC
GATGCCCAACCCTGGGGATTCCGCCTTCAGGGGGGCACGGACTTCGCTCA
GCCCCTGCTGGTGCAAAAGGTGAACGCCGGCAGCTTGTCCGAGCAGGCTG
GCCTCCAGCCCGGCGATGCGGTGGTCAAGATCAATGACGTGGATGTCTTC
AATCTGCGTCACAAGGATGCCCAGGACATTGTGGTGCGCTCCGGCAACAA
CTTTGTCATCACAGTGCAGCGCGGTGGCTCCACCTGGCGCCCGCATGTGA
CACCGACTGGCAATGTGCCGCAGCCCAATTCGCCGTATCTGCATACGGTG
ACG
UFO11236.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zasp52-RW | 7088 | CG30084-RW | 206..550 | 9..353 | 1695 | 99.4 | Plus |
| Zasp52-RV | 3701 | CG37-RV | 206..550 | 9..353 | 1695 | 99.4 | Plus |
| Zasp52-RP | 951 | CG37-RP | 206..550 | 9..353 | 1695 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15783315..15783468 | 271..118 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 15803359..15803471 | 121..9 | 565 | 100 | Minus |
| 2R | 25286936 | 2R | 15783163..15783245 | 353..271 | 385 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:31:04 has no hits.
UFO11236.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:18 Download gff for
UFO11236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp52-RG | 229..578 | 2..353 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:14 Download gff for
UFO11236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp52-RP | 201..550 | 2..353 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:05 Download gff for
UFO11236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp52-RP | 201..550 | 2..353 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:05 Download gff for
UFO11236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15783163..15783244 | 272..353 | 97 | <- | Minus |
| 2R | 15783315..15783466 | 120..271 | 100 | <- | Minus |
| 2R | 15803361..15803476 | 2..119 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:14 Download gff for
UFO11236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11670668..11670749 | 272..353 | 97 | <- | Minus |
| arm_2R | 11670820..11670971 | 120..271 | 100 | <- | Minus |
| arm_2R | 11690866..11690981 | 2..119 | 96 | | Minus |
