UFO11237.5prime Sequence
979 bp (928 high quality bases) assembled on 2012-04-16
> UFO11237.5prime
CAGTCGACATGGTTAACATAGTCGGAGTAGTTTTCCTCTGCGGTCTTGGC
CTCATCAGTGCCGGACGCTTGAATGACGAGGATGTTCTGTCAGATTTGCA
ACGCGTCAGCCAACTCAAAGGACTTGCCCTTGATTTTGTTGGTCAAGTAA
AGGATTTTGATGTGGAGGAGTTGAGCACCCTGGAAACCCGAGTGCCAAGT
CAGGAGGATATGCTGTGTCTAAGCGATTTGACTGCGCTTACGACTGGACT
TCAAAGTGGCCAGTACTGGGCACTGAAAATGTTCGATTCCTGGGGTTCAA
TACCATCTGGTCTACTAACGGGAAACATGTACGACCTGGGAAACTTCGAC
GAGTGCCTCAACATCAATCATGGAGTCAGCCTGGGCAGAACTATCCAGGG
AAAGTACTGTTTTCTTTCAGTGTCTCTTGCCCAGGCGCTGGGAGTCCAGA
GTTCGATCATCGGCCATTTTAAAACTGCCACTTGCCTACCGGCATCCTGC
TCGGCAACTTATATGAACACGTTTATGGGTATGGTGACGAAACAACTGCT
TAACGTCAGTATTCCCAGCTCGGTAATGAGTATCAGCGAATCCAGTTGCC
AAACAAGTGAAAGTGTACCATGGGACGGACTCACCATTTTTATGATAGTG
ATCTTATCGGTGATGGGCTCTTTAGTGGCTTTGTTTTACCTTGTGGGACT
ACTGTCTGGGAAAGAATCATGACCAGCTTCCCACCATTGTAAAGGTGTTT
TTCGGCCAGGGTCAACTCTCGTGCTCTATTTTCGCATTTGTAAAGGTCAA
CTCTAGTCCAAATGTGATTGATTGCCTTCATGGAATTTAGTTGCCTGTCG
CTTCATGTGGGATTGTCCTCCTGCCATCAATATGTATGGCAGCTCTTTGC
CTCAAATTATCAACATTTTCAATGCCATATCGTGGGAGGAGACCCCCCTA
TGGCCAGGTTTTATTCTGCACGGCTTTAC
UFO11237.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10182-RA | 2212 | CG10182-RA | 25..982 | 8..977 | 4415 | 97.9 | Plus |
| CG13325-RD | 2415 | CG13325-RD | 222..845 | 207..837 | 480 | 72.9 | Plus |
| CG13325-RC | 2181 | CG13325-RC | 222..845 | 207..837 | 480 | 72.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23589093..23589459 | 646..280 | 1835 | 100 | Minus |
| 3R | 32079331 | 3R | 23589524..23589795 | 279..8 | 1360 | 100 | Minus |
| 3R | 32079331 | 3R | 23588704..23588907 | 932..721 | 505 | 93.4 | Minus |
| 3R | 32079331 | 3R | 23588970..23589041 | 719..647 | 315 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:31:56 has no hits.
UFO11237.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:26 Download gff for
UFO11237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10182-RA | 14..978 | 1..979 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:38 Download gff for
UFO11237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10182-RA | 18..982 | 1..979 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:22 Download gff for
UFO11237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10182-RA | 18..982 | 1..979 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:22 Download gff for
UFO11237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23588968..23589041 | 647..721 | 97 | <- | Minus |
| 3R | 23588704..23588906 | 722..932 | 93 | <- | Minus |
| 3R | 23589093..23589459 | 280..646 | 100 | <- | Minus |
| 3R | 23589524..23589798 | 1..279 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:38 Download gff for
UFO11237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19414426..19414628 | 722..932 | 93 | <- | Minus |
| arm_3R | 19414690..19414763 | 647..721 | 97 | <- | Minus |
| arm_3R | 19414815..19415181 | 280..646 | 100 | <- | Minus |
| arm_3R | 19415246..19415520 | 1..279 | 98 | | Minus |
