UFO11239.5prime Sequence
1036 bp (989 high quality bases) assembled on 2012-04-16
> UFO11239.5prime
CAGTCGACATGACATCTCCCTATGGATACAGTAAGCCCACCTTTATGATA
ACGGACCACACTCGCGATCCGTATCATCTGCAGCCGGGTGATGACGACGA
CGATCGGGATGAGGATGAGGAGCGTCAGACGAAGCTGCAGGAGATCATCA
GTTGGCTGCACTTGAATGCCAAGCATCGCAGCAAATGCGAAGTAACAGAA
GGTGCCTTACAGGTCTGGCGGACCCTGCCGGAGCGCATTCGTCAGGATCC
CAGTCTAGCCTCCTTTCGCCAGGAGCACGAACGTCTGCATGGCGATGTGG
ACCAGCTGCACGCGGAGGAGTCGGAATTGCGTGTGCAGAATGGACACCAC
GAGGAGACGGCGCTGGCCAACCAGCCATTCACACAGATCGGGATCAATGT
GACGAACGAGGCGGGTCAGGTGCGGGTGCTCGATGGCAGGGATCTGGAGA
ATAACAACGATGATCAACACGACGAGGCCGAGCCGCATGCCAAGAGTTTG
ATACGAAAGTATCTTATCTGGTTTAAGATAGCCATACTCCTGGTGGTCTG
GTGCGTCTTCACCGCCTTCCTGATGTCCAACAACGAGCATGTGGACCAAC
TGAGCCTCATTAGTGTTCCTAGGAATAGCTCACCCAGAGTATTTCCCATT
GCCACCGCCAGTCTGCAGAGGATTGGCCTGGGCCTGCGCGGACCCTTCCG
CCTGCAGGAGAACGAACTGGCCATTAACGCGAGTGTTCCACTGCCCCTGC
TCCAGGTGCAGTGATGCGCAGCTATTTCGATGGCGAGGGCATGGAGATCT
ACATCGAGAACGCCAGCCAGGTGTGGCAACTGACGTGTTCTATCCCGATC
TGATAGACGCCACCAGGGATACAAGAAGCATCGTACCTTCGAGCTGAGTC
CACTGATCCCTTATGGTTGGCCCAGGCCATCGCACGAGCTGAGCTTCGAG
TTCACTAGCTCATTGAGGCGAATTGCCGCTCAACTGAATGTGATGATTCG
CCCATCATAACGGATGGAGTCATCTATAGCTGCGGG
UFO11239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hoe1-RJ | 3422 | CG12787-RJ | 293..1331 | 9..1035 | 4775 | 98.2 | Plus |
| hoe1-RC | 3340 | CG12787-RC | 211..1249 | 9..1035 | 4775 | 98.2 | Plus |
| hoe1-RI | 3462 | CG12787-RI | 673..1532 | 188..1035 | 3880 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4910997..4911513 | 1006..500 | 2010 | 97.1 | Minus |
| 2L | 23513712 | 2L | 4931914..4932092 | 187..9 | 895 | 100 | Minus |
| 2L | 23513712 | 2L | 4911722..4911868 | 440..294 | 735 | 100 | Minus |
| 2L | 23513712 | 2L | 4912672..4912779 | 294..187 | 540 | 100 | Minus |
| 2L | 23513712 | 2L | 4911581..4911645 | 500..436 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:32:00 has no hits.
UFO11239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:27 Download gff for
UFO11239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe1-RC | 205..1243 | 9..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:41 Download gff for
UFO11239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe1-RC | 211..1249 | 9..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:23 Download gff for
UFO11239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe1-RC | 211..1249 | 9..1036 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:23 Download gff for
UFO11239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4910965..4911512 | 501..1036 | 96 | <- | Minus |
| 2L | 4911581..4911641 | 440..500 | 100 | <- | Minus |
| 2L | 4911723..4911867 | 295..439 | 100 | <- | Minus |
| 2L | 4912672..4912778 | 188..294 | 100 | <- | Minus |
| 2L | 4931914..4932092 | 9..187 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:41 Download gff for
UFO11239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4910965..4911512 | 501..1036 | 96 | <- | Minus |
| arm_2L | 4911581..4911641 | 440..500 | 100 | <- | Minus |
| arm_2L | 4911723..4911867 | 295..439 | 100 | <- | Minus |
| arm_2L | 4912672..4912778 | 188..294 | 100 | <- | Minus |
| arm_2L | 4931914..4932092 | 9..187 | 100 | | Minus |
