UFO11240.5prime Sequence
976 bp (975 high quality bases) assembled on 2012-04-16
> UFO11240.5prime
CAGTCGACATGCAGAACGGAAAACCGAGATCTTCGGCCAGGCCGTCGTTC
CACCGCCGTCCCAAAGACGGAGTGGCCAACACCACCACTGATAACGCTGC
TGTCAAGCCGGAGGCCTTGGAGAGCTATACGGGCAACGACGACAACGCCT
GCGTGGTGTGCTTCAAAAACGTGGAAATTTTCTCCATCGGCGACTGTGAT
CATCCCGTGTGCTACGAGTGCTCCACTCGGATGAGGGTTCTCTGCCAGCA
GAACGAGTGCCCCATCTGCCGCCACGTCCTGTCCAAGGTTTTGTTCACAC
TGGACAAGCTGCCCTATCGCGAACTGGAGGCAAATAACCGCTCTGATTTA
TACAGCAAGAAGTACCGCATCGGCTTCTGCACCGCAGAGATAAGACAGCA
ATTCTTCAAATTGCTCGACCATCCCTGCCCGAAATGCGATGCACCTCCAT
ACCGCACGTTCGAGGGCCTTCGCAACCATGTTCGCAGCGAGCATAAACTT
CTGTACTGTGACCTATGCGTCGAGACCCTCAATATCTTCACCTTCGAACG
GAGGTGCTACACTCAGGCGGAGCTGCAGCTACACAACACCAAGGGCGATC
CGGACAATCGGTCGCATCGCGGTCATCCGTTGTGCGAATACTGCAATAAA
CGCTATGTGGACCGTGATGAGTTGTTCCGTCATTTGCGCCGCGAGCACTA
CTTCTGCCACTTTTGCGACGCCGATGGTTGCAATGAGTTCTACAATGACT
ATGCGGATCTGGCGGAACATTTCCGGGCGGAGCACTTTCTCTGCGAGGAG
GGTAAGTGCGCCACCGAGCAGTTTGTCGGCGCATTCCGCAAACGAAATCG
AGTACAAAGCGCACGTGGCCAACGTGCACGGCTAGTCGCTCAACAAGCAG
CAGGCCAAGCAGAACGCGCACCTTGCAAGTGGAGATCACTTTGGGGCCTC
GTGCCGTAAGTGGGCAGACGAACAGG
UFO11240.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11414-RA | 3139 | CG11414-RA | 254..1213 | 9..970 | 4670 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24562406..24562940 | 434..970 | 2480 | 98.3 | Plus |
| 2R | 25286936 | 2R | 24561860..24562140 | 9..289 | 1405 | 100 | Plus |
| 2R | 25286936 | 2R | 24562195..24562342 | 286..433 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:32:04 has no hits.
UFO11240.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:28 Download gff for
UFO11240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11414-RA | 244..1218 | 1..976 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:42 Download gff for
UFO11240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11414-RA | 246..1220 | 1..976 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:25 Download gff for
UFO11240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11414-RA | 246..1220 | 1..976 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:25 Download gff for
UFO11240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24561852..24562138 | 1..287 | 98 | -> | Plus |
| 2R | 24562197..24562342 | 288..433 | 100 | -> | Plus |
| 2R | 24562406..24562947 | 434..976 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:42 Download gff for
UFO11240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20449720..20449865 | 288..433 | 100 | -> | Plus |
| arm_2R | 20449375..20449661 | 1..287 | 98 | -> | Plus |
| arm_2R | 20449929..20450470 | 434..976 | 98 | | Plus |
