UFO11241.5prime Sequence
1044 bp (1010 high quality bases) assembled on 2012-04-16
> UFO11241.5prime
CAGTCGACATGACTACGAAATTCTCAATCAATGGGCTGCCCTATGCAGTG
AATCTAACTAACCTTCCGCCGGATATCACTCTGAACACCTTTATCCGCGA
GCATGCCCAACTCACGGCCACCAAATTCATGTGCCAGGAGGGAGGATGTG
GCGCCTGCATCTGCGTGGTGCGCGATGGAAAGCGCAGCTGGGCTGTCAAT
TCGTGCCTCACTCTGCTGAATACCTGCGCCCAGCTGGAGATCGTGACCGC
CGAGGGATTGGGCAATCAGCGCACCGGCTACAATCCCATCCAGAAGCGTC
TGGCCAAAATGAATGGCACCCAGTGCGGCTTTTGCTCGCCGGGATTCGTG
ATGAACATGTATGGGTTGATGGAGCAGAACGAAGGCAAGGTCACCATGGC
GGAGGTGGAGAACTCCTTTGGTGGGAATATCTGCCGTTGCACTGGATATC
GTCCAATTCTGGATGCCATGAAGTCCTTTGCGGTGGACAGTAACATTGCG
ATTCCCGCCGAGTGCGGGGACATTGAGGATCTAAAACCCCGGAACTGCCC
AAAGACCGGACAAGCCTGCAGTGGTAGCTGCCTTCCGTCCACTTTGGTCT
ACGAAGATGGTGTTCAGTGGCACTGGCCCAAGAGTCTAAGCGAACTGTTC
GACGCCCTAGACAAGGTGAAGGACTCGGAGGAGTTCATGTTGGTGGCTGG
CAACACGGCTCATGGGGTCTACCGAAGGTCGACGGATATCAAGCACTTCA
TCGACGTCCAGGGAGTGGAGGAACTGCATCAGCACAGCTCTGAGGGACAG
CAATTGAAGCTAGGAGCTAATCTCAGTCTCACCCAGACCATGGAAATCAT
TTCGTACTACTTCCAAGCAGCCAGGATTTGATACTTGGACGTTCTGTGAA
CCACATTGATTTGATTGCCATGTTCCAGTGCGAAACTCTGAAACTTTGAC
TGCATTATTTCGATCAAAACAATCCCCGAGTTTCCTTCGATATTTTCTAA
TCCTTTGAGCCTCGAATGTAAAATGTTACCTTTGAAAAACGCTG
UFO11241.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AOX3-RA | 4163 | CG6045-RA | 277..1321 | 9..1044 | 4770 | 97.7 | Plus |
| AOX4-RA | 3832 | CG18516-RA | 95..1009 | 42..948 | 1295 | 77.4 | Plus |
| AOX1-RA | 4228 | CG18522-RA | 271..796 | 62..569 | 725 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15545935..15546670 | 936..203 | 3470 | 99.3 | Minus |
| 3R | 32079331 | 3R | 15551836..15552429 | 790..203 | 955 | 77.8 | Minus |
| 3R | 32079331 | 3R | 15546729..15546886 | 203..46 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 15536018..15536405 | 569..182 | 710 | 78.9 | Minus |
| 3R | 32079331 | 3R | 15541724..15542050 | 529..203 | 510 | 77.1 | Minus |
| 3R | 32079331 | 3R | 15552509..15552639 | 191..61 | 295 | 81.7 | Minus |
| 3R | 32079331 | 3R | 15536441..15536543 | 164..62 | 230 | 81.6 | Minus |
| 3R | 32079331 | 3R | 15547355..15547394 | 48..9 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:32:09 has no hits.
UFO11241.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:28 Download gff for
UFO11241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6045-RA | 268..1320 | 1..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:44 Download gff for
UFO11241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6045-RA | 269..1321 | 1..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:26 Download gff for
UFO11241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AOX3-RA | 269..1321 | 1..1044 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:26 Download gff for
UFO11241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15545935..15546669 | 204..936 | 99 | <- | Minus |
| 3R | 15546729..15546883 | 49..203 | 100 | <- | Minus |
| 3R | 15547355..15547398 | 1..48 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:44 Download gff for
UFO11241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11371657..11372391 | 204..936 | 99 | <- | Minus |
| arm_3R | 11372451..11372605 | 49..203 | 100 | <- | Minus |
| arm_3R | 11373077..11373120 | 1..48 | 91 | | Minus |
