UFO11244.5prime Sequence
701 bp (701 high quality bases) assembled on 2012-04-16
> UFO11244.5prime
CAGTCGACATGTCGTCCCTTTTGAACGCTACCGTCCTGGCAACCGCTGCC
ACCGTGGTTCCCGACTCACAGTTCGTTTTCAACGCCACGGATTACGGCGT
ATTCGCCCTGGTGCTGAGCATCTCTGCCGCTATTGGAGTTTATTTCGGTT
TCTTTGCCAAGGGCGAGGACACCACGGAGGAGTACCTGATGGGCGGCAAG
CGGATGAAAACGATTCCCATCGCCATTTCGCTGGTGGCCAGTCAACTGTC
GGCGATCTCCATAATGACCATTCCGGCGGAAATGTACGCCTACGGAATCA
ACTGGGTTTTCAACGTGGTTTGCATGGTGCTTGTGGTGCCGCTTCTTAAT
TACTTGGTGATCCCGGTTTTCTACAACAATAATATCACAAACTGCTATGA
GTACTTGGAGATGCGCTTTTGCCGGAAGGTGCGAGTGCTGCAGACCTTCA
TCTTCATATTGACGATGTTTTTCATGCTCCCGATCTTTATCTTCCTGCCT
TCCCTGGCCTTTGCACAGGTGACCGGATTTAATGTGCACCTAATCAACAC
CGTTGTGTGCAGCATCTGCGTCTTCTACACCATGTTCGGAGGTATCAAGG
CTGTGGTGTGGACCGATGTTATCCAGGCAGCCATTATGGTTGCATCCGTG
GTCCTAGTGGGCGTTTTGGGCGCCCACCGAGTGGGAGGCTTCTTTTGAAG
T
UFO11244.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smvt-RA | 1996 | CG2191-RA | 105..800 | 5..701 | 3445 | 99.7 | Plus |
| CG2187-RB | 2021 | CG2187-RB | 195..366 | 132..303 | 230 | 76.3 | Plus |
| CG2187-RA | 2580 | CG2187-RA | 754..925 | 132..303 | 230 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31761079..31761475 | 401..5 | 1970 | 99.7 | Minus |
| 3R | 32079331 | 3R | 31760661..31760837 | 695..519 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 31760896..31761015 | 519..400 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 31754395..31754538 | 229..86 | 180 | 75 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:32:18 has no hits.
UFO11244.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:30 Download gff for
UFO11244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smvt-RA | 98..798 | 1..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:48 Download gff for
UFO11244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smvt-RA | 100..800 | 1..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:29 Download gff for
UFO11244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smvt-RA | 100..800 | 1..701 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:29 Download gff for
UFO11244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31760656..31760836 | 520..701 | 99 | <- | Minus |
| 3R | 31760896..31761013 | 402..519 | 100 | <- | Minus |
| 3R | 31761079..31761476 | 1..401 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:48 Download gff for
UFO11244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27586378..27586558 | 520..701 | 99 | <- | Minus |
| arm_3R | 27586618..27586735 | 402..519 | 100 | <- | Minus |
| arm_3R | 27586801..27587198 | 1..401 | 99 | | Minus |
