UFO11246.5prime Sequence
973 bp (964 high quality bases) assembled on 2012-04-16
> UFO11246.5prime
CAGTCGACATGGCACACATCACGACGACGCACGGCAGCTTAAGCCAAGCG
ACAAGGTCTTTGCCCAAATTGAGCAGTCAAGACGAAGAAGGGGGGGCTGG
TCATGGCTTTGGTGGCGGACCGCAACACTTTGAACCCATTCCTCACGATC
ATGATTTCTGCGAAAGAGTCGTTATAAATGTAAGCGGATTAAGGTTTGAG
ACACAACTACGTACGTTAAATCAATTCCCGGACACGCTGCTTGGGGATCC
AGCTCGGAGATTACGGTACTTTGACCCGCTTAGAAATGAATATTTTTTTG
ACCGTAGTCGACCGAGCTTCGATGCGATTTTATACTATTATCAGAGTGGT
GGCCGACTACGGAGACCGGTCAATGTCCCTTTAGACGTATTTAGTGAAGA
AATAAAATTTTATGAATTAGGTGATCAAGCAATTAATAAATTCAGAGAGG
ATGAAGGCTTTATTAAAGAGGAAGAAAGACCATTACCGGATAATGAGAAA
CAGAGAAAAGTCTGGCTGCTCTTCGAGTATCCAGAAAGTTCGCAAGCCGC
CAGAGTTGTAGCCATAATTAGTGTATTTGTTATATTGCTATCAATTGTTA
TATTTTGTCTAGAAACATTACCCGAATTTAAGCATTACAAGGTGTTCAAT
ACAACAACAAATGGCACAAAAATCGAGGAAGACGAGGTGCCTGACATCAC
AGATCTTTTCTTCCTTATAGAAACGTTATGTATTATTTTGGTTTACATTT
GAACTAACTGTCGGTTCCTCGCATGTCCGAACAAATTAAATTTCTGCAGG
GATGTCATGATTGTTATCGACATAATCGCCATCATTCCGTACTTTATAAC
ACTAGCGACTGTCGTTGCCGAAGAGGAGGATACGTTTAATCTTTCAAAAG
CGCAGTCGTCCACAGGACAGTCATCGAATCAGCTATGTCTTGGCAATATA
CGAGTGGAACGATTAGTCCAGTA
UFO11246.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sh-RD | 2442 | CG12348-RD | 275..1239 | 9..967 | 4540 | 98.6 | Plus |
| Sh-RH | 1286 | CG12348-RH | 196..1105 | 9..916 | 4395 | 99.1 | Plus |
| Sh-RA | 1814 | CG12348-RA | 275..1184 | 9..916 | 4395 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17951412..17951613 | 644..443 | 1010 | 100 | Minus |
| X | 23542271 | X | 17952986..17953156 | 350..180 | 855 | 100 | Minus |
| X | 23542271 | X | 17950625..17950765 | 903..763 | 660 | 97.9 | Minus |
| X | 23542271 | X | 17953221..17953348 | 181..54 | 640 | 100 | Minus |
| X | 23542271 | X | 17951194..17951315 | 762..640 | 550 | 98.4 | Minus |
| X | 23542271 | X | 17952677..17952774 | 445..348 | 490 | 100 | Minus |
| X | 23542271 | X | 18014262..18014310 | 57..9 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:31:42 has no hits.
UFO11246.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:24 Download gff for
UFO11246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sh-RD | 275..1245 | 9..972 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:33 Download gff for
UFO11246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sh-RD | 275..1245 | 9..972 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:17 Download gff for
UFO11246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sh-RD | 275..1245 | 9..972 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:17 Download gff for
UFO11246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17951192..17951313 | 642..763 | 97 | <- | Minus |
| X | 17950611..17950764 | 764..915 | 96 | <- | Minus |
| X | 17951415..17951610 | 446..641 | 100 | <- | Minus |
| X | 17952677..17952773 | 349..445 | 100 | <- | Minus |
| X | 17952988..17953156 | 180..348 | 100 | <- | Minus |
| X | 17953223..17953346 | 56..179 | 100 | <- | Minus |
| X | 18014264..18014310 | 9..55 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:33 Download gff for
UFO11246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17844644..17844797 | 764..915 | 96 | <- | Minus |
| arm_X | 17845225..17845346 | 642..763 | 97 | <- | Minus |
| arm_X | 17845448..17845643 | 446..641 | 100 | <- | Minus |
| arm_X | 17846710..17846806 | 349..445 | 100 | <- | Minus |
| arm_X | 17847021..17847189 | 180..348 | 100 | <- | Minus |
| arm_X | 17847256..17847379 | 56..179 | 100 | <- | Minus |
| arm_X | 17908297..17908343 | 9..55 | 100 | | Minus |
