UFO11247.5prime Sequence
819 bp (819 high quality bases) assembled on 2012-04-16
> UFO11247.5prime
CAGTCGACATGCACCAAGTTGGCAGTACCAACATGATGAAGATTCAATCG
ATTGCTCAGTTATCGATAACCATGGACGCGGGCACCAAAATCCTAGTTGT
GGGCGATGTGCGAGGTCGCTTCAAGCAGCTATTTCAGCGCGTGGAGCAGG
TCAACAAAAAAGCGGGACCCTTCGAAATCCTTTGCTGCGTCGGTGACTTC
TTCGGGGAGGACAAGCAAAACGAGGAACTGATTGCCTACAAAAATGGTTT
TAAGCATATCACTGTTCCCACCTATATCCTGGGACCCAACCAAAGGGAGC
ATGAAAAATACTTTGAAAATCTGACGGACGGTGAAATCTGCACCAATCTT
ACGTATCTTGGTCGACGTGGGGTCTACACGCTGAGCAGTGGTGTTAAAAT
TGCCTATCTAAGTGGTTTGGAGGCACAGGGCACTGCAGATTCCGCTGGCT
CGGAACACGAGTTCACCAAAGCCGATGTCATCGCTGTGAGGAACTCATGT
TTGGTGTCCAAGAACTGCTCCACAGAGTACCGCGGTGTGGATGTGCTCCT
AACATCGCAATGGCCCTTTGGTATGCAGGAGAAGGAAAACGCCACAGCAT
CCAAGTTGGTATCATTTCTTTGTCGTGAAATAAAGCCGCGCTATCACTTT
TGTGCCATTAATGGAACACACTACGAAAGCGCACCCTTTCGGATGCCCAA
AGATGAGACTACCCAGTTTGAACTGTGCACTCGCTTTCATTTTCCCTTGC
GGAAGTGGGAAATGCCGAAAAGCCAAGTACATCTATGCACTCAACCTGAA
CCCAGTTAGACAAATCACG
UFO11247.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7741-RA | 3158 | CG7741-RA | 1406..2214 | 9..819 | 3930 | 99.3 | Plus |
| CG7741-RB | 1708 | CG7741-RB | 1..764 | 54..819 | 3705 | 99.2 | Plus |
| CG7741-RC | 1703 | CG7741-RC | 1..759 | 54..819 | 3620 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11303820..11304152 | 259..591 | 1665 | 100 | Plus |
| 2R | 25286936 | 2R | 11304208..11304434 | 591..819 | 925 | 96.5 | Plus |
| 2R | 25286936 | 2R | 11303596..11303762 | 92..258 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 11303450..11303532 | 9..91 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:31:47 has no hits.
UFO11247.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:25 Download gff for
UFO11247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7741-RA | 1395..2209 | 1..819 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:35 Download gff for
UFO11247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7741-RA | 1400..2214 | 1..819 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:19 Download gff for
UFO11247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7741-RA | 1400..2214 | 1..819 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:19 Download gff for
UFO11247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11303444..11303532 | 1..91 | 95 | -> | Plus |
| 2R | 11303596..11303762 | 92..258 | 100 | -> | Plus |
| 2R | 11303820..11304151 | 259..590 | 100 | -> | Plus |
| 2R | 11304208..11304434 | 591..819 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:35 Download gff for
UFO11247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7191713..7191939 | 591..819 | 97 | | Plus |
| arm_2R | 7190949..7191037 | 1..91 | 95 | -> | Plus |
| arm_2R | 7191101..7191267 | 92..258 | 100 | -> | Plus |
| arm_2R | 7191325..7191656 | 259..590 | 100 | -> | Plus |
