UFO11248.5prime Sequence
781 bp (778 high quality bases) assembled on 2012-04-16
> UFO11248.5prime
CAGTCGACATGTTAATAGCAAGCGGCTTCTTACTGTTTCAGTTTCTTTCA
TACGGTTTGGGAGTTCCACCCTTGGTCAGAATTGGAGCTATATTTTCAAA
CCAGCCTGGAATGTATAACTCGGAGTTAGCGTTTAGATACGCTATTCATA
GACTTAATATGGACAAAAGCCTTTTGCCTGAGACTACCGTTGATTACTAT
GTTGAATACGTAAACCGATTTGACTCTTTCGAGACAGTTCAAAAAGTGTG
CAAACTTATACGAGTTGGTGTTCAAGCTGTTTTTAGTCCAACTGACTCTG
TTTTGGCGACCCATATAAATTCAATTTGCGACGCACTGGACATCCCAAAC
ATAGGCCGGTCTGCCCATGACTTTTCTATTAACGTCTATCCATCGAAGCA
ACTTGTAAATTATGCCTTTAACGATGTAATACAGTATTTAAATTGGACAC
GCTTTGGGATATTGCATGAAAAAGAAAATGGAATCATAAACTTGCATCAG
CTATCCCGGTCATTTCACGGAGAAGTTCATATGCGACAAGTTTCTCGGGA
TTCATATGTATCCGCATTGAACGAATTTAAAGGAAAGGAAATACATAATA
TTTAATTATTGATACAAAACTCGAAACGGTATTTCCATATTTGTTGAAAA
ATATATTGCAGCAACAAATGAATGAATACAAGTACCATTACTTGTTTACA
AGCTTCGATTTGGAAACTTATGATCTGGGAATACTTTTATATATAATTTC
GTGAACATTACATCGTTTCAATTAGTCGACA
UFO11248.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9935-RD | 2910 | CG9935-RD | 30..802 | 2..781 | 3645 | 98.3 | Plus |
| CG9935-RB | 2913 | CG9935-RB | 30..802 | 2..781 | 3645 | 98.3 | Plus |
| CG9935-RA | 2971 | CG9935-RA | 30..802 | 2..781 | 3645 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 645948..646184 | 481..245 | 1185 | 100 | Minus |
| 4 | 1348131 | 4 | 646233..646395 | 246..84 | 815 | 100 | Minus |
| 4 | 1348131 | 4 | 643989..644156 | 652..480 | 650 | 97.1 | Minus |
| 4 | 1348131 | 4 | 637333..637459 | 653..781 | 485 | 95.3 | Plus |
| 4 | 1348131 | 4 | 642602..642728 | 781..653 | 485 | 95.3 | Minus |
| 4 | 1348131 | 4 | 646444..646527 | 85..2 | 390 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:31:51 has no hits.
UFO11248.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-16 11:41:25 Download gff for
UFO11248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9935-RC | 29..801 | 1..780 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:37 Download gff for
UFO11248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9935-RA | 29..801 | 1..780 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:20 Download gff for
UFO11248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9935-RA | 29..801 | 1..780 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:20 Download gff for
UFO11248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 642603..642728 | 653..780 | 95 | <- | Minus |
| 4 | 643989..644155 | 481..652 | 97 | <- | Minus |
| 4 | 645949..646182 | 247..480 | 100 | <- | Minus |
| 4 | 646233..646394 | 85..246 | 100 | <- | Minus |
| 4 | 646445..646527 | 1..84 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:37 Download gff for
UFO11248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 663229..663354 | 653..780 | 95 | <- | Minus |
| arm_4 | 664615..664781 | 481..652 | 97 | <- | Minus |
| arm_4 | 666575..666808 | 247..480 | 100 | <- | Minus |
| arm_4 | 666859..667020 | 85..246 | 100 | <- | Minus |
| arm_4 | 667071..667153 | 1..84 | 96 | | Minus |
